Repositories list

• dashboard-components

  Public
  TypeScript

  •

  GNU Affero General Public License v3.0

  •0•4•67•13•Updated Jan 23, 2026Jan 23, 2026

• LAPIS-SILO

  Public
  Sequence Indexing engine for Large Omics data

  C++

  •

  GNU Affero General Public License v3.0

  •4•18•128•12•Updated Jan 22, 2026Jan 22, 2026

• dashboards

  Public
  TypeScript

  •

  GNU Affero General Public License v3.0

  •0•7•91•8•Updated Jan 22, 2026Jan 22, 2026

• influenza-override-groups

  Public
  This directory creates a JSON that contains the mapping of Influenza genbank assemblies to segment accessions

  Python

  •0•0•5•0•Updated Jan 22, 2026Jan 22, 2026

• LAPIS

  Public

  GenSpectrum/LAPIS’s past year of commit activity
  An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2

  researchgenomicsepidemiology+ 2covid-19sars-cov-2

  Kotlin

  •

  GNU Affero General Public License v3.0

  •6•29•62•11•Updated Jan 22, 2026Jan 22, 2026

• evobench

  Public

  GenSpectrum/evobench’s past year of commit activity
  Tool to produce, store and analyze performance data of SILO and perhaps later LAPIS?

  Rust

  •0•1•12•1•Updated Jan 21, 2026Jan 21, 2026

• LAPIS-SILO-e2e

  Public

  GenSpectrum/LAPIS-SILO-e2e’s past year of commit activity
  TypeScript

  •1•1•10•0•Updated Jan 19, 2026Jan 19, 2026

• cov-spectrum-website

  Public

  GenSpectrum/cov-spectrum-website’s past year of commit activity
  A web platform to detect and analyze variants of SARS-CoV-2

  researchgenomicsepidemiology+ 3covid-19sars-cov-2cov-spectrum

  TypeScript

  •

  GNU General Public License v3.0

  •16•61•86•16•Updated Jan 15, 2026Jan 15, 2026

• silo-benchmark-ci

  Public
  SILO benchmarking CI system setup

  Shell

  •0•0•1•0•Updated Jan 15, 2026Jan 15, 2026

• nextclade-datasets

  Public
  0•0•0•3•Updated Jan 13, 2026Jan 13, 2026

• api-query

  Public
  Somewhat generic utility for querying some API(s)

  Rust

  •1•0•0•0•Updated Dec 14, 2025Dec 14, 2025

• locksafely

  Public
  Better locks via lock files for shell scripts

  Shell

  •1•0•0•0•Updated Nov 20, 2025Nov 20, 2025

• docker-autoheal

  Public
  Monitor and restart unhealthy docker containers.

  Shell

  •

  MIT License

  •249•0•0•0•Updated Nov 19, 2025Nov 19, 2025

• .github

  Public
  0•0•0•0•Updated Sep 21, 2025Sep 21, 2025

• lineage-definitions

  Public
  Python

  •0•0•1•0•Updated Sep 15, 2025Sep 15, 2025

• ingest

  Public
  Kotlin

  •0•1•0•0•Updated Sep 2, 2025Sep 2, 2025

• silo-benchmark-runner

  Public archive
  Running evobench benchmarks on LAPIS-SILO

  0•0•0•0•Updated Jul 7, 2025Jul 7, 2025

• WISE-mut-freq-data-uploader

  Public
  This repo includes a script to upload waste water virus mutation frequency data, produced by pangolin automation running v-pipe.

  Python

  •0•1•0•0•Updated Apr 17, 2025Apr 17, 2025

• firewall

  Public
  Rust

  •1•0•0•0•Updated Apr 15, 2025Apr 15, 2025

• loculus-addons

  Public
  JavaScript

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• cov-spectrum-server

  Public
  The server part of CoV-Spectrum

  cov-spectrum

  Kotlin

  •

  GNU General Public License v3.0

  •3•6•1•3•Updated Jan 18, 2025Jan 18, 2025

• genspectrum-homepage

  Public archive
  HTML

  •0•1•0•0•Updated Dec 21, 2024Dec 21, 2024

• loculus-config

  Public
  Shell

  •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• lapisR

  Public
  R

  •0•2•1•0•Updated Apr 4, 2024Apr 4, 2024

• genspectrum-chat-conversations

  Public
  0•0•0•0•Updated Jun 19, 2023Jun 19, 2023

• discussions

  Public
  0•0•0•0•Updated Apr 9, 2023Apr 9, 2023

• cov-spectrum-ppretty

  Public
  R

  •

  GNU General Public License v3.0

  •0•1•10•0•Updated Dec 17, 2022Dec 17, 2022

• mpox-spectrum-website

  Public archive
  TypeScript

  •1•4•8•0•Updated Dec 17, 2022Dec 17, 2022

• cov-spectrum-docs

  Public archive
  cov-spectrum

  1•2•0•0•Updated Nov 3, 2021Nov 3, 2021