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@GreenwoodLab Statistical Genetics at the Lady Davis Institute

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    31 repositories

    • MOLA

      Public
      R
      •
      MIT License
      •1•1•0•0•Updated Jul 5, 2026Jul 5, 2026

    • ADNI_code

      Public
      Repository storing R code used for ADNI paper
      R
      •1•0•0•0•Updated May 4, 2026May 4, 2026

    • Influenza_copula

      Public
      Here contains all code used for the influenza manuscript
      R
      •1•0•0•0•Updated Apr 11, 2026Apr 11, 2026

    • LVEXdetector

      Public
      XCI inference in R using LVE-X models for methylation data (bisulfite-seq MC/UC counts; Illumina array), with sex-aware likelihoods and uncertainty quantificati…
      HTML
      •
      Other
      •0•0•0•0•Updated Mar 17, 2026Mar 17, 2026

    • Random_Projections

      Public
      Random Projections & KDE
      1•0•0•0•Updated Sep 6, 2023Sep 6, 2023

    • casebaseweights

      Public
      R
      •
      Other
      •5•1•0•0•Updated Aug 24, 2023Aug 24, 2023

    • CHYME

      Public
      Constrained HYdroxy Methylation Estimation method
      R
      •1•0•0•0•Updated Jun 23, 2022Jun 23, 2022

    • funtooNorm

      Public
      R
      •7•6•2•0•Updated Mar 29, 2022Mar 29, 2022

    • Beta-Diversity

      Public
      Simulation for generating realistic distance matrices
      R
      •1•0•0•0•Updated Mar 28, 2022Mar 28, 2022

    • BDcocolasso

      Public
      Implementation of the block-descent-CoCoLasso, inspired from the article https://arxiv.org/pdf/1510.07123.pdf
      R
      •
      Other
      •9•0•0•0•Updated Nov 1, 2021Nov 1, 2021

    • hidetify-1

      Public
      C++
      •4•0•0•0•Updated Aug 16, 2021Aug 16, 2021

    • SOMNiBUS

      Public
      SmOoth ModeliNg of BisUlfite Sequencing
      R
      •
      Other
      •4•0•0•0•Updated Dec 7, 2020Dec 7, 2020

    • mdine

      Public
      HTML
      •6•0•0•0•Updated Nov 12, 2019Nov 12, 2019

    • hidetify

      Public
      C++
      •0•0•0•0•Updated Sep 13, 2019Sep 13, 2019

    • pcev

      Public
      R
      •3•4•2•0•Updated Dec 16, 2018Dec 16, 2018

    • ggmix

      Public
      R
      •
      Other
      •6•0•0•0•Updated Oct 3, 2018Oct 3, 2018

    • imputePrepSanger

      Public
      This repository contains scripts to prepare plink genotype files for imputation on the Sanger server.
      Perl
      •9•0•0•0•Updated Sep 13, 2018Sep 13, 2018

    • methylation450KPipeline

      Public
      Functions to run a 450K pipeline
      R
      •
      GNU General Public License v2.0
      •4•1•0•0•Updated Sep 13, 2018Sep 13, 2018

    • DMCHMM

      Public
      Differentially Methylated CpG using Hidden Markov Model
      R
      •2•0•0•0•Updated Sep 5, 2018Sep 5, 2018

    • pcev_pipelineCBRAIN

      Public
      A pipeline to run a pcev analysis from the R package on CBRAIN.
      R
      •0•0•0•0•Updated Sep 4, 2018Sep 4, 2018

    • test1

      Public
      Apache License 2.0
      •0•0•0•0•Updated Aug 29, 2018Aug 29, 2018

    • sail

      Public
      sparse additive interaction learning
      R
      •
      Other
      •7•0•0•0•Updated Aug 22, 2018Aug 22, 2018

    • clusterProfiler

      Public
      :bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
      R
      •267•0•0•0•Updated Jul 4, 2018Jul 4, 2018

    • CIVMR

      Public
      R
      •2•0•0•0•Updated Sep 11, 2017Sep 11, 2017

    • GreenwoodLab.github.io

      Public
      HTML
      •
      Other
      •3•1•0•0•Updated May 31, 2016May 31, 2016

    • CellTypeAdjustment

      Public
      R
      •0•7•0•0•Updated Mar 1, 2016Mar 1, 2016

    • RVPedigree

      Public
      R
      •3•1•2•0•Updated Feb 11, 2016Feb 11, 2016

    • MURAT

      Public
      R
      •3•3•1•0•Updated Feb 5, 2016Feb 5, 2016

    • knitr-tutorial

      Public
      Reproducible research: An introduction to knitr
      HTML
      •
      GNU General Public License v2.0
      •7•0•0•0•Updated Jun 1, 2015Jun 1, 2015

    • KnitR.examples

      Public
      examples to use the RmarkDown Script in Rstudio
      0•0•0•0•Updated Jun 1, 2015Jun 1, 2015
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