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@Martini-Force-Field-Initiative Martini Force Field Initiative

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    17 repositories

    • Martini-Force-Field-Initiative.github.io

      Public
      Web Portal of the Martini Force Field Initiative for coarse grained biomolecular simulations.
      CSS
      •
      MIT License
      •17•9•4•0•Updated Apr 14, 2026Apr 14, 2026

    • M3-Metabolome

      Public
      Topology and coordinate files for the Martini 3 Metabolome
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated Apr 8, 2026Apr 8, 2026

    • fast_forward

      Public
      Map atomistic trajectories to CG Martini level fast and compute interactions
      Python
      •6•16•18•3•Updated Apr 2, 2026Apr 2, 2026

    • Automartini_M3

      Public
      Automatic Martini force field generator for small organic molecules (up to 25 heavy atoms), Martini 3 compatible
      Python
      •
      GNU General Public License v2.0
      •8•37•4•1•Updated Mar 23, 2026Mar 23, 2026

    • M3_Ionizable_Lipids

      Public
      Martini 3 Building Blocks for Lipid Nanoparticle Design
      molecular-dynamicsmartinilnps
      molecular-dynamicsmartinilnps
      Jupyter Notebook
      •7•25•2•0•Updated Mar 18, 2026Mar 18, 2026

    • M3-Small-Molecules

      Public
      Martini 3 small molecule database
      databasemolecular-dynamicscoarse-graining
      databasemolecular-dynamicscoarse-grainingmartini3small-molecules
      Shell
      •
      Apache License 2.0
      •13•72•14•5•Updated Oct 3, 2025Oct 3, 2025

    • M3-Lipid-Parameters

      Public
      Home of the public Martini 3 lipid parameters
      Python
      •
      Apache License 2.0
      •7•25•3•0•Updated Sep 29, 2025Sep 29, 2025

    • MartiniGlass

      Public
      A tool for visualizing Martini force field simulations in VMD
      Tcl
      •
      Apache License 2.0
      •4•23•5•0•Updated Aug 22, 2025Aug 22, 2025

    • M3-Bible

      Public
      The Martini 3 Bible: a guide to bead type selection
      Python
      •2•8•4•0•Updated Aug 12, 2025Aug 12, 2025

    • Bartender

      Public
      Automated bonded parameters for Martini 3
      Go
      •
      GNU Lesser General Public License v3.0
      •1•26•2•0•Updated Jul 20, 2025Jul 20, 2025

    • Martini3-IDP-parameters

      Public
      Martini3-IDP force field
      Python
      •1•7•2•0•Updated Jul 10, 2025Jul 10, 2025

    • martini-forcefields

      Public
      Collection of interaction and molecule parameters for the Martini3 force-field
      Python
      •
      Apache License 2.0
      •6•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • CopenhagenWorkshop2024

      Public
      3•3•0•0•Updated Dec 8, 2024Dec 8, 2024

    • OLIVES

      Public
      Algorithm for identifying hydrogen bond networks in CG proteins to implement Go-like Martini 3 models
      Python
      •
      Apache License 2.0
      •1•16•2•0•Updated Oct 25, 2024Oct 25, 2024

    • GoMartini

      Public
      New virtual-site implementation of GōMartini for the Martini 3 forcefield
      C
      •
      Apache License 2.0
      •2•8•8•1•Updated Nov 30, 2023Nov 30, 2023

    • M3-Sterol-Parameters

      Public
      Home of the Martini 3 Sterol Parameters
      Python
      •2•13•0•0•Updated Oct 10, 2023Oct 10, 2023

    • MartiniDiscussions

      Public
      Repo hosting the Martini organization discussion page.
      0•0•0•0•Updated Sep 12, 2023Sep 12, 2023
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