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    18 repositories

    • alphafill

      Public
      AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular conte…
      C++
      •
      BSD 2-Clause "Simplified" License
      •22•122•3•6•Updated Aug 5, 2026Aug 5, 2026

    • libcifpp

      Public
      Library containing code to manipulate mmCIF and PDB files
      protein-structuremmcifpdb-files
      protein-structuremmcifpdb-files
      C++
      •
      BSD 2-Clause "Simplified" License
      •18•43•0•0•Updated Aug 5, 2026Aug 5, 2026

    • AlphaBridge

      Public
      Python
      •
      Other
      •10•59•5•0•Updated Jul 15, 2026Jul 15, 2026

    • libpdb-redo

      Public
      Library containing shared code for various PDB-REDO programs
      C++
      •
      BSD 2-Clause "Simplified" License
      •1•1•0•0•Updated Jul 6, 2026Jul 6, 2026

    • cif-tools

      Public
      A suite of programs to manipulate and examine mmCIF files
      C++
      •
      BSD 2-Clause "Simplified" License
      •1•7•3•0•Updated Jun 30, 2026Jun 30, 2026

    • density-fitness

      Public
      Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures
      C++
      •
      BSD 2-Clause "Simplified" License
      •2•10•0•0•Updated Jun 29, 2026Jun 29, 2026

    • dssp

      Public
      Application to assign secondary structure to proteins
      proteinspdbdssp
      proteinspdbdssp
      C++
      •
      BSD 2-Clause "Simplified" License
      •33•266•1•0•Updated Jun 23, 2026Jun 23, 2026

    • tortoize

      Public
      Application to calculate ramachandran z-scores
      C++
      •
      BSD 2-Clause "Simplified" License
      •1•2•0•0•Updated Jun 16, 2026Jun 16, 2026

    • platonyzer

      Public
      C++
      •
      BSD 2-Clause "Simplified" License
      •1•1•0•0•Updated Jun 16, 2026Jun 16, 2026

    • pdb-redo-main

      Public
      core pdb-redo script, tools and data files
      Shell
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jun 9, 2026Jun 9, 2026

    • pdb-redo-session-manager

      Public
      A session manager for PDB-REDO
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•1•2•4•Updated May 9, 2026May 9, 2026

    • dssp-server

      Public
      Web server implementation for DSSP
      CMake
      •0•1•0•0•Updated Apr 23, 2026Apr 23, 2026

    • HalBS

      Public
      CMake
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Dec 15, 2025Dec 15, 2025

    • pdb-redo-archive-manager

      Public
      An daemon that provides access to archived PDB-REDO entries
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

    • fix-entry-id

      Public
      Application to change the entry_id of an mmCIF file
      C++
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • pdb-redo-builder

      Public
      Docker files to create an image you can use to build pdb-redo executables that run on older OS's like CentOS
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • privateer

      Public
      The Swiss Army knife for carbohydrate structure validation, refinement and analysis
      C++
      •
      GNU Lesser General Public License v2.1
      •11•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • 3d-beacons-registry

      Public
      Python
      •
      Apache License 2.0
      •10•0•0•0•Updated Jul 23, 2022Jul 23, 2022
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