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    113 repositories

    • wdl-dockerfiles

      Public
      Python
      •
      BSD 3-Clause Clear License
      •2•4•0•2•Updated Aug 25, 2026Aug 25, 2026

    • HiFi-human-WGS-WDL

      Public
      WDL
      •
      BSD 3-Clause Clear License
      •57•87•8•0•Updated Aug 18, 2026Aug 18, 2026

    • mitorsaw

      Public
      Other
      •0•8•0•0•Updated Aug 17, 2026Aug 17, 2026

    • paraphase

      Public
      HiFi-based caller for highly similar paralogous genes
      Rust
      •
      Other
      •18•73•9•3•Updated Aug 14, 2026Aug 14, 2026

    • bowhead

      Public
      Other
      •0•2•0•0•Updated Aug 12, 2026Aug 12, 2026

    • pbsamoa

      Public
      A C++23 library for reading and writing SAM/BAM/CRAM files.
      C++
      •
      BSD 3-Clause Clear License
      •1•1•0•0•Updated Aug 11, 2026Aug 11, 2026

    • aardvark

      Public
      A tool for sniffing out the differences in vari-Ants
      benchmarkingvariant-callssequencing-data
      benchmarkingvariant-callssequencing-datavariant-comparison
      Rust
      •
      MIT License
      •1•47•0•0•Updated Aug 10, 2026Aug 10, 2026

    • kivvi

      Public
      KIV2/D4Z4 genotyper using HiFi WGS data
      Rust
      •
      Other
      •0•13•0•0•Updated Aug 9, 2026Aug 9, 2026

    • SVTopo

      Public
      Complex structural variant visualization for HiFi sequencing data
      bioinformaticsgenomicsdata-visualization
      bioinformaticsgenomicsdata-visualizationstructural-variationgenomics-visualizationhifistructural-variants
      Rust
      •
      Other
      •4•51•1•0•Updated Aug 6, 2026Aug 6, 2026

    • isocall

      Public
      A method to joint-call RNA isoforms across many IsoSeq samples
      Other
      •0•18•3•0•Updated Aug 6, 2026Aug 6, 2026

    • pb-metagenomics-tools

      Public
      Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
      HTML
      •
      BSD 3-Clause Clear License
      •34•204•0•0•Updated Jul 31, 2026Jul 31, 2026

    • pb-StarPhase

      Public
      A phase-aware pharmacogenomic diplotyper for PacBio datasets
      pacbiopharmacogenomicshifi
      pacbiopharmacogenomicshifi
      Rust
      •
      Other
      •6•24•0•0•Updated Jul 30, 2026Jul 30, 2026

    • MethBat

      Public
      A battery of methylation tools for PacBio HiFi reads
      methylationsegmentationhifi
      methylationsegmentationhifipacbio-sequencing
      Other
      •2•54•0•0•Updated Jul 15, 2026Jul 15, 2026

    • pbfusion

      Public
      Python
      •
      Other
      •3•24•2•0•Updated Jul 15, 2026Jul 15, 2026

    • owl

      Public
      Rust
      •
      Other
      •1•19•0•0•Updated Jul 15, 2026Jul 15, 2026

    • pbsv

      Public
      pbsv - PacBio structural variant (SV) calling and analysis tools
      Python
      •
      Other
      •27•168•0•0•Updated Jul 15, 2026Jul 15, 2026

    • pbmm2

      Public
      A minimap2 frontend for PacBio native data formats
      Raku
      •
      BSD 3-Clause Clear License
      •33•221•2•0•Updated Jul 2, 2026Jul 2, 2026

    • Paraviewer

      Public
      Python
      •
      Other
      •1•9•0•0•Updated Jul 2, 2026Jul 2, 2026

    • .github

      Public
      0•1•0•0•Updated Jun 26, 2026Jun 26, 2026

    • pangu

      Public
      Python
      •
      BSD 3-Clause Clear License
      •4•12•0•0•Updated Jun 26, 2026Jun 26, 2026

    • ParaviewerWGSDemo

      Public
      HTML
      •0•0•0•0•Updated Jun 25, 2026Jun 25, 2026

    • ParaviewerPTCPDemo

      Public
      HTML
      •0•0•0•0•Updated Jun 25, 2026Jun 25, 2026

    • Orographer

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Jun 25, 2026Jun 25, 2026

    • IsoSeq

      Public
      Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
      clusteringdiscoverypacbio
      clusteringdiscoverypacbiornaisoformspolishing
      BSD 3-Clause Clear License
      •61•242•0•0•Updated Jun 24, 2026Jun 24, 2026

    • pigeon

      Public
      BSD 3-Clause Clear License
      •0•8•0•0•Updated Jun 24, 2026Jun 24, 2026

    • pbjam

      Public
      Rust
      •
      Other
      •0•2•0•0•Updated Jun 12, 2026Jun 12, 2026

    • trgt

      Public
      Tandem repeat genotyping and visualization from PacBio HiFi data
      Rust
      •
      Other
      •17•144•36•0•Updated Jun 10, 2026Jun 10, 2026

    • barcoding

      Public
      Lima - Demultiplex Barcoded PacBio Samples
      single-moleculebarcodepacbio
      single-moleculebarcodepacbiolimademultiplexing
      R
      •
      BSD 3-Clause Clear License
      •24•67•0•0•Updated Jun 8, 2026Jun 8, 2026

    • jasmine

      Public
      Call select base modifications in PacBio HiFi reads
      BSD 3-Clause Clear License
      •1•19•0•0•Updated May 29, 2026May 29, 2026

    • HiPhase

      Public
      Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
      variantsphasingpacbio-data
      variantsphasingpacbio-datahifistructural-variantsshort-tandem-repeats
      Rust
      •
      Other
      •5•87•0•0•Updated May 27, 2026May 27, 2026
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