Repositories list

• DendroTweaks

  Public
  Python toolbox for creating and validating single-cell neuronal models with active dendrites.

  simulationneuroscienceneuron+ 6

  simulationneuroscienceneuronmod-filesneuron-simulatorion-channelsdendritesbiophysical-modelingswc-files

  Python

  •

  Mozilla Public License 2.0

  •1•5•1•0•Updated Feb 12, 2026Feb 12, 2026

• dendrify

  Public
  Introducing dendrites to spiking neural networks. Designed for the Brian 2 simulator.

  spiking-neural-networksbrian2dendrites+ 3

  spiking-neural-networksbrian2dendritessnnsdendritic-mechanismsreduced-neuron-models

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •7•43•1•0•Updated Jan 15, 2026Jan 15, 2026

• DendroTweaksApp

  Public
  A web-based Python toolbox designed to explore dendritic dynamics in biophysical neuronal models

  Python

  •

  Mozilla Public License 2.0

  •0•1•0•0•Updated Dec 8, 2025Dec 8, 2025

• Turi_Neuron_2019

  Public
  CA1 network with biophysical neuronal models with simplified morphology

  NMODL

  •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

• dendritic_anns

  Public
  Python

  •

  GNU General Public License v3.0

  •2•30•0•0•Updated Feb 14, 2025Feb 14, 2025

• mouse2afc

  Public
  Python

  •

  GNU General Public License v3.0

  •4•1•5•2•Updated Jul 24, 2024Jul 24, 2024

• mirduplexsvm

  Public
  We address the problem of predicting the position of a miRNA duplex on a microRNA hairpin via the development and application of a novel SVM-based methodology.

  MATLAB

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 22, 2024Jul 22, 2024

• Malakasis_et_al_2023

  Public
  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Dec 4, 2023Dec 4, 2023

• Bilash_et_al_2022

  Public
  Python

  •

  GNU General Public License v2.0

  •1•1•0•0•Updated Dec 8, 2022Dec 8, 2022

• Shuman_Nat_Neurosci_2020

  Public
  CA1 network with biophysical neuronal models with simplified morphology

  AMPL

  •1•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• automated_cell_type_classification_2020

  Public
  Classification tool of neuronal cell types based on Ca2+ data

  Python

  •2•1•0•0•Updated Jan 13, 2022Jan 13, 2022

• Kastellakis_CellRep_2016

  Public
  Network: Integrate-and-Fire pyramidal neurons with simplified morphology and 4 plasticity rules

  C

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 17, 2021Dec 17, 2021

• Geiller_Neuron_2020

  Public
  Python

  •1•1•0•0•Updated Dec 15, 2021Dec 15, 2021

• Cutsuridis_NeurobiolLearnMem_2015

  Public
  AMPL

  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• Gomez_FrontComputNeurosci_2011

  Public
  C

  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• Sidiropoulou_PLoSComputBiol_2012

  Public
  AMPL

  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• Markaki_Neurocomputing_2005

  Public
  PostScript

  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• Poirazi_CA1_detailed

  Public
  CA1 Pyramidal Neuron with detailed morphology

  AMPL

  •0•1•0•0•Updated Dec 10, 2021Dec 10, 2021

• Frank_NatCommun_2018

  Public
  C

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• Papoutsi_FrontNeuralCircuits_2013_PLoSCompBiol_2014

  Public
  Layer 5 Prefrontal cortex (PFC) microcircuit

  AMPL

  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• Papoutsi_JNeurophysiol_2017

  Public
  AMPL

  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• Gidon_Science_2020

  Public
  AMPL

  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• Park_Papoutsi_NatCommun_2019

  Public
  AMPL

  •0•0•0•0•Updated Dec 10, 2021Dec 10, 2021

• Tzilivaki_NatCommun_2019

  Public
  Tzilivaki et al., 2019, Nature Communications

  C

  •0•0•0•0•Updated Dec 9, 2021Dec 9, 2021

• Danielson_Neuron_2017

  Public
  Dentate Gyrus (DG) network with Integrate-and-Fire point neurons

  Python

  •0•0•0•0•Updated Dec 9, 2021Dec 9, 2021

• Chavlis_Hippocampus_2017

  Public
  Dentate Gyrus (DG) network including Integrate-and-Fire Granule Cells with dendrites

  Python

  •0•0•0•0•Updated Dec 9, 2021Dec 9, 2021