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@SEFSC Southeast Fisheries Science Center

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    29 repositories

    • FATES-BLH-ScaleAgeing

      Public
      Development of a machine learning model for menhaden aging. Originally forked from FATES-BLH-OtolithAgeing and modified to only contain scale ageing.
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Dec 4, 2025Dec 4, 2025

    • SFD-CFB-Caribbean-Strategic-Planning

      Public
      This repo contains all reports, results, and documentation from the Caribbean Strategic Planning project.
      Other
      •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • SEFSC-ODM-Management-History

      Public
      A method for generating an analysis-ready version of the Management History Dataset
      R
      •
      Other
      •3•5•3•0•Updated Sep 24, 2025Sep 24, 2025

    • SFD-AllocationForecasting

      Public
      An R function to automate stock assessment forecasting in SS under group allocation restraints
      R
      •
      Other
      •2•7•1•0•Updated Sep 20, 2025Sep 20, 2025

    • SEFSC-Resources

      Public
      Resources for New SEFSC GitHub Users
      Other
      •1•7•1•0•Updated Sep 18, 2025Sep 18, 2025

    • FATES-BLH-OtolithAgeing

      Public
      Development of a machine learning models for fish aging
      Jupyter Notebook
      •
      Other
      •1•1•0•0•Updated Sep 17, 2025Sep 17, 2025

    • SEFSC-documentation-jekyll-skeleton

      Public template
      A GitHub Pages documentation template for SEFSC based on the ioos-documentation-jekyll-skeleton repo
      CSS
      •0•0•0•1•Updated Sep 17, 2025Sep 17, 2025

    • SEFSC-SEDAR-CR-84-RW

      Public
      Stock assessment model runs developed during the SEDAR 84 Review Workshop held from July 15 to July 18, 2025 in Fort Lauderdale, Florida
      HTML
      •
      Other
      •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • BAM_MSE

      Public
      Repo to host BAM MSE code development
      C++
      •
      Other
      •0•2•0•0•Updated Aug 5, 2025Aug 5, 2025

    • SEFSC-SEDAR-CR-84-PR-YTS-2022

      Public
      Visual Basic 6.0
      •
      Other
      •0•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • SEFSC-SEDAR-CR-84-STTJ-YTS-2022

      Public
      Visual Basic 6.0
      •
      Other
      •0•0•1•0•Updated Jul 17, 2025Jul 17, 2025

    • SEFSC-SEDAR-CR-84-STX-SLP-2022

      Public
      Visual Basic 6.0
      •
      Creative Commons Zero v1.0 Universal
      •0•0•3•0•Updated Jul 16, 2025Jul 16, 2025

    • SEFSC-PAM-Lab-Manual

      Public
      Lab manual for SEFSC Passive Acoustics Ecology Program
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • SEFSC-documentation-quarto-skeleton

      Public template
      A GitHub Pages documentation template for SEFSC based on the NMFS Open Science NOAA-quarto-simple-python repo
      Dockerfile
      •
      Other
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • documentation-theme-quarto

      Public
      A NOAA Fisheries-branded theme for documentation and help pages created using Quarto.
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 14, 2025May 14, 2025

    • FATES-ATI-FrameXtraction

      Public
      Simple tool for extracting frames from stereo videos and saving as images
      Jupyter Notebook
      •0•0•1•0•Updated Apr 15, 2025Apr 15, 2025

    • FATES-ATI-DomainAdaptationLabelShift

      Public
      0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • FATES-ATI-EnhancedYOLOv8

      Public
      Python
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • CEFI-GoMCLIM-DataSynth

      Public
      Data and code used for the US Gulf of Mexico Wide Ecosystem Model (GWEM) developed in Ecopath with Ecosim and Ecospace
      ecosystemresearchmodelingfisheriesfoodwebs
      HTML
      •
      Other
      •3•6•1•0•Updated Feb 10, 2025Feb 10, 2025

    • Red_Tide_Methods

      Public
      A repository to track simulation analyses investigating alternative methods for incorporating and modeling red tide effects on fishery populations within the stock assessment process.
      Other
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • Red_tide_benchmarks

      Public
      Simulation code for testing the impact of red tide mortality on stock assessment benchmark calculations
      R
      •
      Other
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • VesselStrikeRiskModel

      Public
      Vessel strike risk model for large whales
      R
      •
      Apache License 2.0
      •1•3•0•0•Updated Oct 7, 2024Oct 7, 2024

    • documentation-theme-jekyll

      Public
      A Jekyll-based theme designed for documentation and help systems. Forked from NOAA IOOS (https://github.com/ioos/documentation-theme-jekyll), which itself was forked from source repo: https://github.com/tomjohnson1492/documentation-theme-jekyll for IOOS DMAC documentation use.
      CSS
      •1.2k•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • FATES-ATI-ChuteFishFullPipeline

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • SEAMAPD21

      Public
      SEAMAPD21 was created to enable fishery scientists and researchers to process raw image-based data at high volumes at a much quicker rate than current manual methods. This open-source dataset contains 90,000 annotations for 130 species of fish from two annual surveys done in 2018 and 2019 in strategic areas of the Gulf of Mexico using baited rem…
      Shell
      •
      Other
      •3•5•1•1•Updated Mar 6, 2024Mar 6, 2024

    • SEFSC-Caribbean-Strategic-Plan

      Public
      Sharing resources associated with the SEFSC Caribbean Strategic Planning Project
      JavaScript
      •
      Other
      •0•1•0•0•Updated Mar 5, 2024Mar 5, 2024

    • .github

      Public
      0•0•0•0•Updated Sep 1, 2023Sep 1, 2023

    • QuartoReport_SE

      Public
      Demo report
      TeX
      •16•1•0•0•Updated Aug 12, 2022Aug 12, 2022

    • SEFSC-Template

      Public template
      This is the default SEFSC template for new repositories
      Other
      •3•2•1•0•Updated Jul 6, 2022Jul 6, 2022