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    15 repositories

    • MOSS

      Public
      Microscopy Oriented Segmentation with Supervision
      Python
      •0•1•0•0•Updated Feb 3, 2026Feb 3, 2026

    • nisb

      Public
      HTML
      •0•0•0•0•Updated Dec 9, 2025Dec 9, 2025

    • areaX-connectomic-analysis

      Public
      Code to analyse connectomic datasets that are processed with SyConn
      Python
      •
      GNU General Public License v2.0
      •0•1•1•0•Updated Nov 18, 2025Nov 18, 2025

    • banis

      Public
      BANIS: Baseline for Affinity-based Neuron Instance Segmentation
      Python
      •
      MIT License
      •4•7•0•1•Updated Sep 10, 2025Sep 10, 2025

    • SyConn

      Public
      Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
      image-processingimage-analysisconnectomicssemantic-segmentationconnectivity-matrixmorphology-analysis
      Python
      •
      GNU General Public License v2.0
      •8•43•3•2•Updated Jul 28, 2025Jul 28, 2025

    • beach_collection

      Public
      Python
      •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • DeepFocus

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 17, 2025Feb 17, 2025

    • autodoc

      Public
      This is a repository for automatic generation of docstrings
      Python
      •
      MIT License
      •1•9•3•0•Updated Jan 29, 2024Jan 29, 2024

    • SyConn2Scripts

      Public
      Python
      •0•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • SyConn-Neuroglancer

      Public
      Adaptation of the WebGL-based volumetric viewer https://github.com/google/neuroglancer. Provides an analysis interface for filtering neurons based on properties…
      webgltypescriptpython3
      TypeScript
      •
      Apache License 2.0
      •0•1•1•0•Updated May 4, 2023May 4, 2023

    • emcaps

      Public
      Code for the paper "Genetically encoded barcodes for correlative volume electron microscopy"
      Python
      •
      MIT License
      •1•1•1•0•Updated May 1, 2023May 1, 2023

    • MorphX

      Public
      Toolkit for exploration and segmentation of 3D morphologies.
      Python
      •
      GNU General Public License v2.0
      •1•3•0•0•Updated May 28, 2022May 28, 2022

    • kimimaro

      Public
      Skeletonize densely labeled 3D image segmentations.
      Python
      •
      GNU General Public License v3.0
      •29•1•0•0•Updated Nov 8, 2021Nov 8, 2021

    • LightConvPoint

      Public
      Python
      •
      Other
      •15•1•0•0•Updated Nov 5, 2021Nov 5, 2021

    • NeuronX

      Public
      Application of Morphx to neurons
      Python
      •1•0•0•0•Updated Mar 28, 2021Mar 28, 2021