Repositories list

• epiworldR

  Public
  A general framework for quick epidemiological ABM models

  simulationabmagent-based-modeling+ 11

  simulationabmagent-based-modelingepidemiologyr-packageepidemicssirr-programmingsir-modelseir+ 4

  R

  •

  Other

  •33 forks•1414 stars•2626 issues•33 pull requests•Updated Aug 11, 2026Aug 11, 2026

• epiworld

  Public
  A general framework for quick epidemiological ABM models

  simulationabmagent-based-modeling+ 1

  simulationabmagent-based-modelingcontagion

  C++

  •

  MIT License

  •22 forks•1010 stars•2929 issues•22 pull requests•Updated Aug 11, 2026Aug 11, 2026

• PHS-7045-egga

  Public
  EGGA: Example (e.g.) using GitHub Actions

  examplerstatsgithub-actions+ 1

  examplerstatsgithub-actionsuou

  Makefile

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 9, 2026Aug 9, 2026

• epiworldRShiny

  Public
  Shiny webapp for epiworldR package

  abmagent-based-modelingepidemiology+ 7

  abmagent-based-modelingepidemiologynetwork-analysisshinyappsshinydashboardsimulation-modelingepidemic-simulationscovid-19netsci

  R

  •

  Other

  •22 forks•33 stars•1010 issues•11 pull request•Updated Aug 6, 2026Aug 6, 2026

• defm

  Public
  Estimation and simulation of Multi-binary response models

  rstatisticssimulation+ 4

  rstatisticssimulationmodelingergmrpackagemle

  C++

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 6, 2026Aug 6, 2026

• measles

  Public
  Tools for modeling measles

  simulationabmrstats+ 8

  simulationabmrstatsagent-based-modelingepidemiologyr-packager-programmingindividual-based-modellingmeaslesrstats-package+ 1

  C++

  •

  Other

  •11 fork•44 stars•55 issues•00 pull requests•Updated Aug 6, 2026Aug 6, 2026

• netplot-connections

  Public
  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 6, 2026Aug 6, 2026

• PHS7045-advanced-programming

  Public
  githubgitr+ 3

  githubgitrhpcadvanced-programmingprogramming-course

  HTML

  •66 forks•44 stars•66 issues•11 pull request•Updated Jul 31, 2026Jul 31, 2026

• mc3logit

  Public
  R

  •

  Other

  •00 forks•11 star•44 issues•00 pull requests•Updated Jul 27, 2026Jul 27, 2026

• epiworldpy

  Public
  Python bindings to the Epiworld ABM Library

  C++

  •

  MIT License

  •00 forks•00 stars•33 issues•44 pull requests•Updated Jul 10, 2026Jul 10, 2026

• SensIAT

  Public
  R Package for PCORI project

  R

  •

  Other

  •00 forks•22 stars•66 issues•33 pull requests•Updated Jul 1, 2026Jul 1, 2026

• ckdepict

  Public
  SAS

  •22 forks•00 stars•00 issues•11 pull request•Updated Jun 30, 2026Jun 30, 2026

• CompCausal

  Public
  R

  •

  Other

  •00 forks•00 stars•11 issue•11 pull request•Updated Jun 28, 2026Jun 28, 2026

• varicella

  Public
  C++

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 12, 2026Jun 12, 2026

• APS-Aim-7

  Public
  R

  •

  GNU General Public License v3.0

  •22 forks•00 stars•22 issues•00 pull requests•Updated Mar 4, 2026Mar 4, 2026

• Calibrate_ABM

  Public
  Simulation framework for evaluating ML and Approximate Bayesian Computation (ABC) in epidemic parameter estimation.

  machine-learningcalibrationepidemiology+ 2

  machine-learningcalibrationepidemiologyapproximate-bayesian-computationbilstm

  R

  •00 forks•00 stars•11 issue•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• uofuepibio.r-universe.dev

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• .github-private

  Public
  Repository of UofUEpiBio GitHub Agents

  MIT License

  •00 forks•00 stars•11 issue•00 pull requests•Updated Nov 22, 2025Nov 22, 2025

• using-ai

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 8, 2025Sep 8, 2025

• imaginary-structures2

  Public
  HTML

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jul 18, 2025Jul 18, 2025

• imaginary-structures

  Public
  HTML

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jul 18, 2025Jul 18, 2025

• intro-r-ggplot2-quarto

  Public
  Introduction to R via ggplot2 and quarto

  ggplot2rworkshop+ 4

  ggplot2rworkshoprmarkdowndata-analysisr-programmingquarto

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 11, 2025Jul 11, 2025

• defm-sunbelt2025

  Public
  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 26, 2025Jun 26, 2025

• citer

  Public
  Boosting your R package citations

  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 12, 2025Jun 12, 2025

• pydefm

  Public
  C++

  •

  Other

  •00 forks•00 stars•11 issue•66 pull requests•Updated Jun 9, 2025Jun 9, 2025

• mermaidr

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 8, 2025Apr 8, 2025

• hais

  Public
  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 3, 2025Apr 3, 2025

• epiworldR-workshop

  Public
  Workshop Website

  workshopsimulationabm+ 8

  workshopsimulationabmrstatsagent-based-modelingepidemiologynetwork-analysissirnetwork-diffusionseir+ 1

  R

  •11 fork•22 stars•66 issues•00 pull requests•Updated Mar 24, 2025Mar 24, 2025

• ipsd

  Public
  Interpreter Passthrough Server

  C

  •

  Mozilla Public License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 23, 2025Jan 23, 2025

• epiworld-benchmark

  Public
  C++

  •00 forks•00 stars•00 issues•11 pull request•Updated Dec 5, 2024Dec 5, 2024