Repositories list

• NDD_multiomic_study_2025

  Public
  A 2025 study investigating the link between NDD and CHD using multi-omic methods

  R

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• LAMA

  Public
  Automatic phenotyping tool for 3D images

  Python

  •

  Other

  •55 forks•00 stars•00 issues•00 pull requests•Updated Jan 8, 2026Jan 8, 2026

• Spliceogen

  Public
  Java

  •22 forks•55 stars•00 issues•00 pull requests•Updated Nov 5, 2025Nov 5, 2025

• ShinyCell

  Public
  Shiny Interactive Web Apps for Single-Cell Data

  R

  •

  GNU General Public License v3.0

  •6969 forks•00 stars•00 issues•11 pull request•Updated Oct 27, 2025Oct 27, 2025

• Ularcirc

  Public
  An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

  rna-seqrna-seq-analysiscircrna+ 5

  rna-seqrna-seq-analysiscircrnacircular-rnasequencing-rnasplicing-visualizationsplicing-analysesbacksplicing

  R

  •

  GNU General Public License v3.0

  •88 forks•1818 stars•77 issues•00 pull requests•Updated Aug 14, 2025Aug 14, 2025

• ShinyCell2

  Public
  ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial transcriptomics data w…

  R

  •

  GNU General Public License v3.0

  •1616 forks•00 stars•00 issues•00 pull requests•Updated Jun 13, 2025Jun 13, 2025

• VSCode-DevContainer-dockerfile

  Public
  Initiate a VS Code dev container from a dockerfile

  dockerdockerfiledevops+ 2

  dockerdockerfiledevopsdevelopmentdevcontainer

  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 13, 2025May 13, 2025

• KICA

  Public
  KICA: A MATLAB package for high-throughput analysis of calcium and voltage imaging data from cardiac cells

  MATLAB

  •00 forks•11 star•00 issues•00 pull requests•Updated May 5, 2025May 5, 2025

• variant_calling_and_annotation_pipeline

  Public
  Scripts to call, annotate and analyse variants for multiple samples of whole genome sequencing (WGS)

  Shell

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 5, 2025May 5, 2025

• AZ-container-apps-practice

  Public
  Python

  •00 forks•00 stars•00 issues•11 pull request•Updated Mar 22, 2025Mar 22, 2025

• kic_data_analyser

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 19, 2024Dec 19, 2024

• LQTS-BB-Hons24

  Public
  LQTS BB Honours Project 2024 (itak1): Holter feature detection, heatmap and paired analysis of Holter ECGs

  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 5, 2024Nov 5, 2024

• CAPS

  Public
  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 12, 2024Jun 12, 2024

• MetaDenovo

  Public
  MetaDenovo : An automated framework to detect de novo mutations from whole genome trio data using cloud computing technology.

  WDL

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 28, 2024May 28, 2024

• SCN5A_SyncroPatch

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 12, 2024Mar 12, 2024

• DCM_polygenic_study_2024

  Public
  A 2024 study on polygenic risk scores and familial inheritance of dilated cardiomyopathy

  R

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 15, 2024Feb 15, 2024

• sSNVs

  Public
  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 21, 2024Jan 21, 2024

• shinylive

  Public
  A guide for deploying Shinylive Python application into Github Pages

  HTML

  •2323 forks•00 stars•00 issues•00 pull requests•Updated Jan 17, 2024Jan 17, 2024

• FibroblastIntegration

  Public
  Code related to the integration analysis of cardiac fibroblasts

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •11 fork•33 stars•00 issues•00 pull requests•Updated Nov 14, 2023Nov 14, 2023

• CompanyPortal

  Public
  Company-Portal-Icon

  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 3, 2023Oct 3, 2023

• SpliceSM

  Public
  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 27, 2023Jul 27, 2023

• TrioSim

  Public
  Shell

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 18, 2023Jul 18, 2023

• FlowGrid

  Public
  Jupyter Notebook

  •

  MIT License

  •33 forks•1111 stars•11 issue•22 pull requests•Updated Jul 6, 2023Jul 6, 2023

• Sierra

  Public
  Discover differential transcript usage from polyA-captured single cell RNA-seq data

  sierraalternative-splicingscrna-seq+ 2

  sierraalternative-splicingscrna-seqisoformsalternative-polyadenylation

  R

  •

  GNU General Public License v3.0

  •1919 forks•5757 stars•2323 issues•00 pull requests•Updated Jun 29, 2023Jun 29, 2023

• ShinyCell-Docker

  Public
  Shiny Interactive Web Apps for Single-Cell Data

  R

  •

  GNU General Public License v3.0

  •6969 forks•00 stars•00 issues•00 pull requests•Updated Jun 29, 2023Jun 29, 2023

• SyncroPatch-Back-end-Analysis-Code

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 31, 2023Mar 31, 2023

• vpv

  Public
  Volumetric viewer

  Python

  •

  Other

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 10, 2023Mar 10, 2023

• azure-nextflow-cipa

  Public
  Nextflow

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 6, 2023Mar 6, 2023

• azure-nextflow

  Public
  automate azure batch deployment

  Rust

  •

  MIT License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Mar 1, 2023Mar 1, 2023

• cipa_master_training_docker

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2023Feb 10, 2023