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@bhardwaj-lab Bhardwaj Lab

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    9 repositories

    • bhardwaj-lab.github.io

      Public
      hugo source for the lab website
      CSS
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 1, 2026Aug 1, 2026

    • .github

      Public
      0•0•0•0•Updated Jul 21, 2026Jul 21, 2026

    • sincei

      Public
      A command-line and python toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data
      genomicssingle-cellepigenomics
      genomicssingle-cellepigenomics
      Python
      •
      MIT License
      •0•8•5•0•Updated Jul 13, 2026Jul 13, 2026

    • snakepit

      Public
      Collection of snakemake workflows
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 7, 2026Jul 7, 2026

    • scChICflow

      Public
      Workflow for processing single-cell ChIC (Chromatin ImmunoCleavage) data
      transcriptomicschromatinsingle-cell-genomics
      transcriptomicschromatinsingle-cell-genomicsmnase-seqmultiomics
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jun 15, 2026Jun 15, 2026

    • task_predict_modality

      Public
      Predicting the profiles of one modality (e.g. protein abundance) from another (e.g. mRNA expression).
      Python
      •
      MIT License
      •4•0•0•0•Updated Jun 5, 2026Jun 5, 2026

    • PPO-agent-framework-Cellular-reprogramming

      Public
      Designed and trained an ppo agent to predict which sequences of alterations are necessary to shift a cell's identity from a start state into any desired target …
      Jupyter Notebook
      •1•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • ecosystem-packages

      Public
      Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •84•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • Optimized-CellOracle

      Public
      Modified CellOracle package used as the environment simulator for RL-guided cellular reprogramming. Integrated GPU access through Cupy or optimized matrix multi…
      Python
      •
      Other
      •1•0•0•0•Updated Nov 19, 2025Nov 19, 2025
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