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    • Himito

      Public
      WDL
      •
      MIT License
      •1•9•0•0•Updated Feb 21, 2026Feb 21, 2026

    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      dockerapplicationworkflowcloudbioinformaticsscalaexecutorhpccontainerswdl
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •378•1.1k•759•50•Updated Feb 21, 2026Feb 21, 2026

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      sciencebioinformaticssparkgenomicsgenomengssequencingdnagatk
      Java
      •
      Other
      •623•1.9k•1.3k•148•Updated Feb 21, 2026Feb 21, 2026

    • depmap-portal

      Public
      Code for the DepMap portal at depmap.org
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •1•8•1•10•Updated Feb 20, 2026Feb 20, 2026

    • dig-dug-portal

      Public
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•1•0•Updated Feb 20, 2026Feb 20, 2026

    • pathology-tools

      Public
      Jupyter Notebook
      •0•2•0•3•Updated Feb 20, 2026Feb 20, 2026

    • seqr

      Public
      web-based analysis tool for rare disease genomics
      Python
      •
      GNU Affero General Public License v3.0
      •93•200•42•6•Updated Feb 20, 2026Feb 20, 2026

    • dsp-appsec-infrastructure-apps

      Public
      This repository hosts DSP AppSec internal infrastructure apps deployed in GKE.
      securityapplication-securityappsecsecurity-scannersecure-developmentsecurity-automationsecurity-toolsdevsecopssecurity-scanappsecurity
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•7•0•10•Updated Feb 20, 2026Feb 20, 2026

    • gatk-sv

      Public
      A structural variation pipeline for short-read sequencing
      bioinformaticsgenomicsstructural-variationstructural-variants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •76•201•97•25•Updated Feb 20, 2026Feb 20, 2026

    • gnomad_methods

      Public
      Hail helper functions for the gnomAD project and Translational Genomics Group
      genomicsgenomesexomeshail
      Python
      •
      MIT License
      •31•100•9•9•Updated Feb 20, 2026Feb 20, 2026

    • warp

      Public
      Warp Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •112•225•6•10•Updated Feb 20, 2026Feb 20, 2026

    • dig-aggregator-methods

      Public
      Monorepo of methods implemented for the Aggregator
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•1•0•9•Updated Feb 20, 2026Feb 20, 2026

    • long-read-pipelines

      Public
      Long read production pipelines
      pipelineswdlvariant-callingde-novo-assemblylong-reads
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •25•151•95•25•Updated Feb 20, 2026Feb 20, 2026

    • bican-mccarroll-manuscript1

      Public
      Scripts used to process data for the first McCarroll lab BICAN manuscript
      R
      •
      MIT License
      •0•0•0•2•Updated Feb 20, 2026Feb 20, 2026

    • depmap-omics-wgs

      Public
      Python
      •0•1•3•0•Updated Feb 20, 2026Feb 20, 2026

    • gnomad_qc

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •29•69•5•14•Updated Feb 20, 2026Feb 20, 2026

    • cellpainting-gallery

      Public
      Cell Painting Gallery
      Other
      •16•121•11•4•Updated Feb 20, 2026Feb 20, 2026

    • 2025_Pillar_VarChAMP

      Public
      Repository for analyzing VarChAMP dataset in the pillar project publication.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Feb 20, 2026Feb 20, 2026

    • delphy

      Public
      Fast, scalable, accurate and accessible Bayesian phylogenetics
      C++
      •
      MIT License
      •4•42•0•0•Updated Feb 20, 2026Feb 20, 2026

    • orsp-pub

      Public
      Public ORSP Compliance Portal
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•25•Updated Feb 20, 2026Feb 20, 2026

    • permutect

      Public
      Permutect, an incredibly efficient deep learning architecture for somatic and germline variant calling
      Python
      •1•9•10•2•Updated Feb 20, 2026Feb 20, 2026

    • pyqtl

      Public
      Collection of analysis tools for quantitative trait loci
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•61•0•2•Updated Feb 20, 2026Feb 20, 2026

    • xipher

      Public
      Tools for calling X-inactivation in scRNA-seq data
      R
      •
      MIT License
      •0•0•0•1•Updated Feb 20, 2026Feb 20, 2026

    • broad-nnfc-hiPSC-to-EC

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • thurloe

      Public
      A simple service to store arbitrary key/value pairs
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•1•Updated Feb 19, 2026Feb 19, 2026

    • sam

      Public
      workbench identity and access management
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •12•43•3•8•Updated Feb 19, 2026Feb 19, 2026

    • poola

      Public
      Python package to analyze the results of pooled CRISPR screens
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•0•3•Updated Feb 19, 2026Feb 19, 2026

    • palantir-workflows

      Public
      Utility workflows for the DSP hydro.gen team (formerly palantir)
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •11•26•4•4•Updated Feb 19, 2026Feb 19, 2026

    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      javascriptgenomicsgnomad
      TypeScript
      •
      MIT License
      •49•86•167•14•Updated Feb 19, 2026Feb 19, 2026

    • qprimer_designer

      Public
      Design tool for highly performant qPCR diagnostics.
      Python
      •
      MIT License
      •1•4•0•0•Updated Feb 19, 2026Feb 19, 2026