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    91 repositories

    • germs-lab.github.com

      Public
      GERMS Lab Research Website
      SCSS
      •
      Other
      •2.4k•1•0•0•Updated Sep 1, 2026Sep 1, 2026

    • soil-amoA-diversity-primer-coverage

      Public
      Code and processed data for bacterial amoA diversity and primer coverage analyses across soil metagenomes.
      Python
      •0•0•0•0•Updated Aug 3, 2026Aug 3, 2026

    • rethinking-soil-core-microbiome-analysis

      Public
      Analysis code and processed data for the New Phytologist Viewpoint “Rethinking the soil core microbiome".
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • germs_miscanthus

      Public
      R
      •
      Other
      •0•0•0•0•Updated May 22, 2026May 22, 2026

    • PAPER_Oilcane_Rhizosphere

      Public
      Code repository for oilcane manuscript
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 22, 2026May 22, 2026

    • oilcane_T3

      Public
      R
      •
      Other
      •0•0•0•0•Updated May 21, 2026May 21, 2026

    • mxg_genotype_exudates

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated May 20, 2026May 20, 2026

    • BRCore

      Public
      R
      •
      Other
      •1•1•5•0•Updated May 20, 2026May 20, 2026

    • SOPs

      Public
      Noir
      •
      MIT License
      •5•1•0•0•Updated Apr 29, 2026Apr 29, 2026

    • SynCom_Speci_Prime

      Public
      Developing a primer design pipeline for the detection of isolates within a bacterial synthetic community.
      Shell
      •1•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • BRCore_manuscript

      Public
      R
      •0•0•0•0•Updated Dec 8, 2025Dec 8, 2025

    • lightSABR

      Public
      R
      •
      Other
      •0•0•3•0•Updated Oct 17, 2025Oct 17, 2025

    • PAPER_miscanthus_soil_response

      Public
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • oilcane-metagenome-analysis

      Public
      Analysis Files for Oilcane Paper
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • interbrc-microbiome

      Public
      Materials for the DOE Inter-BRC Microbiome Workshop (Ames, IA, 2024)
      Ruby
      •
      MIT License
      •1•0•0•2•Updated Sep 16, 2024Sep 16, 2024

    • brc-data

      Public
      R
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • MetaFunPrimer

      Public
      A qPCR primer design pipeline to target environmentally abundant functional genes
      C
      •
      MIT License
      •3•1•0•0•Updated Oct 11, 2023Oct 11, 2023

    • oilcane

      Public
      R
      •1•0•0•0•Updated Apr 19, 2023Apr 19, 2023

    • DARTE-QM

      Public
      HTML
      •2•0•0•0•Updated Jan 3, 2022Jan 3, 2022

    • IA_Lake_Microcystin

      Public
      Shell
      •1•0•0•0•Updated Nov 8, 2021Nov 8, 2021

    • pit_foaming_manuscript

      Public
      codes, functions, and scripts for swine manure foaming manuscript
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 26, 2021Feb 26, 2021

    • brc-tutorial

      Public
      Repository for microbiome workshop files
      R
      •
      GNU General Public License v3.0
      •20•1•0•0•Updated Jan 22, 2021Jan 22, 2021

    • evaluatePCR

      Public
      An R package to evaluate PCR results
      R
      •1•1•0•0•Updated Jan 17, 2021Jan 17, 2021

    • blast_crash_course

      Public
      Teaching complete beginners their first command line BLAST.
      bioinformaticsworkshopblast
      bioinformaticsworkshopblastbeginner-friendly
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 17, 2020Nov 17, 2020

    • ec2-init

      Public
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 10, 2020Nov 10, 2020

    • ncbi-scripts

      Public
      HTML
      •12•0•0•0•Updated Nov 2, 2020Nov 2, 2020

    • biomark-bioinformatics

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 29, 2020Oct 29, 2020

    • LAMPS-miscanthus-microbiome

      Public
      Analysis files to accompany our sumbmitted paper characterizing the LAMPS Miscanthus Microbiome.
      MIT License
      •1•1•0•0•Updated Aug 27, 2020Aug 27, 2020

    • biomark-data-dev

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 22, 2020May 22, 2020

    • simple.dada

      Public
      R package to simplify the DADA2 pipeline.
      R
      •1•0•0•0•Updated Jan 23, 2020Jan 23, 2020
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