Skip to content

@libscran libscran

Change the repository type filter

All

    Repositories list

    28 repositories

    • scrapbook

      Public
      Book for the scrapper package
      TeX
      •
      Other
      •0•0•0•0•Updated Jan 9, 2026Jan 9, 2026

    • scrapper

      Public
      R bindings to C++ code for single-cell analysis
      R
      •
      Other
      •0•7•2•0•Updated Jan 9, 2026Jan 9, 2026

    • scranpy

      Public
      Single-cell data analysis, from C++ to Python
      Python
      •
      MIT License
      •0•10•3•1•Updated Jan 7, 2026Jan 7, 2026

    • Rigraphlib

      Public
      Prebuilt igraph static library for Bioconductor packages
      C
      •1•1•1•0•Updated Dec 26, 2025Dec 26, 2025

    • scrapple

      Public archive
      User-friendly wrappers for single-cell analysis
      R
      •
      Other
      •0•0•0•0•Updated Dec 26, 2025Dec 26, 2025

    • clrm1

      Public
      A slightly improved method for ADT normalization
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • scran_markers

      Public
      Marker detection from single-cell expression data
      C++
      •
      MIT License
      •0•1•0•0•Updated Dec 15, 2025Dec 15, 2025

    • umappp

      Public
      C++ port of the UMAP algorithm
      C++
      •
      BSD 2-Clause "Simplified" License
      •14•68•11•0•Updated Dec 15, 2025Dec 15, 2025

    • scran_qc

      Public
      Compute simple quality control metrics for each cell
      C++
      •
      MIT License
      •0•0•1•0•Updated Dec 9, 2025Dec 9, 2025

    • scran_pca

      Public
      Various flavors of principal components analysis
      C++
      •
      MIT License
      •1•0•0•0•Updated Dec 7, 2025Dec 7, 2025

    • scran_variances

      Public
      Model per-gene variances in log-expression data
      C++
      •
      MIT License
      •0•0•0•0•Updated Dec 7, 2025Dec 7, 2025

    • scran_blocks

      Public
      Blocking utilities for libscran
      C++
      •
      MIT License
      •0•0•0•0•Updated Dec 7, 2025Dec 7, 2025

    • scran_tests

      Public
      Test utilities for libscran
      C++
      •
      MIT License
      •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • scran_graph_cluster

      Public
      Graph-based clustering for single-cell data
      C++
      •
      MIT License
      •0•0•0•0•Updated Nov 28, 2025Nov 28, 2025

    • mnncorrect

      Public
      C++ implementation of the MNN correction algorithm
      C++
      •
      MIT License
      •0•5•1•0•Updated Nov 27, 2025Nov 27, 2025

    • scran_aggregate

      Public
      Aggregate expression values across groups of cells
      C++
      •
      MIT License
      •0•1•1•0•Updated Nov 11, 2025Nov 11, 2025

    • gsdecon

      Public
      C++ port of the GSDecon algorithm
      C++
      •
      MIT License
      •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • topicks

      Public
      Pick top genes for downstream analyses.
      C++
      •
      MIT License
      •0•2•0•0•Updated Nov 9, 2025Nov 9, 2025

    • qdtsne

      Public
      Quick-and-dirty t-SNE in C++
      C++
      •
      MIT License
      •3•11•1•0•Updated Nov 3, 2025Nov 3, 2025

    • mumosa

      Public
      Multi-modal single-cell analyses
      C++
      •
      MIT License
      •0•1•0•0•Updated Oct 27, 2025Oct 27, 2025

    • phyper

      Public
      Hypergeometric distribution tail calculations
      C++
      •
      MIT License
      •0•0•0•0•Updated Sep 4, 2025Sep 4, 2025

    • nenesub

      Public
      Subsampling based on nearest neighbors
      C++
      •
      MIT License
      •0•0•0•0•Updated Aug 28, 2025Aug 28, 2025

    • scran_norm

      Public
      Normalize and log-transform count matrices
      C++
      •
      MIT License
      •0•0•0•0•Updated Aug 25, 2025Aug 25, 2025

    • .github

      Public
      Organization profile
      MIT License
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • scran.chan

      Public
      A slimmed down version of scran, based on the C++ library of the same name.
      R
      •
      MIT License
      •0•10•0•0•Updated Oct 15, 2024Oct 15, 2024

    • libscran

      Public archive
      scran, but in C++.
      cpp
      C++
      •
      MIT License
      •0•7•2•0•Updated Oct 15, 2024Oct 15, 2024

    • scran-cli

      Public
      A command line interface to scran
      C++
      •
      MIT License
      •0•3•0•0•Updated Oct 14, 2024Oct 14, 2024

    • aggregate-demonstrator

      Public archive
      Demonstration of how to vendor aggregateAcrossCells
      C++
      •0•1•0•0•Updated Mar 25, 2024Mar 25, 2024