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    • SigRepo

      Public
      SigRepo: An R package for storing and processing omic signatures
      R
      GNU General Public License v3.0
      13220Updated Mar 11, 2026Mar 11, 2026
    • sigrecon

      Public
      Benchmarking tasks for the recontextualization of gene expression signatures
      R
      GNU General Public License v3.0
      00100Updated Mar 11, 2026Mar 11, 2026
    • Server Architecture of SigRepo Database
      HTML
      GNU General Public License v3.0
      0030Updated Mar 3, 2026Mar 3, 2026
    • RSNet

      Public
      Resampling-based Network Structure Inference
      R
      GNU General Public License v3.0
      0000Updated Feb 24, 2026Feb 24, 2026
    • sigProCon

      Public
      Evaluate genes driving signature
      R
      GNU General Public License v3.0
      1100Updated Feb 24, 2026Feb 24, 2026
    • brcasurv

      Public
      Age-adjusted survival associations of gene signatures in TCGA/METABRIC/SCANB
      R
      GNU General Public License v3.0
      0000Updated Feb 18, 2026Feb 18, 2026
    • Analysis scripts associated to the manuscript "Whole blood transcriptional signatures of age and survival identified in Long Life Family and Integrative Longevi…
      R
      GNU General Public License v3.0
      0000Updated Jan 21, 2026Jan 21, 2026
    • R
      GNU General Public License v3.0
      0000Updated Jan 9, 2026Jan 9, 2026
    • R
      GNU General Public License v3.0
      0340Updated Dec 16, 2025Dec 16, 2025
    • hypeR-GEM

      Public
      A R Package For Connecting Metabolic Signatures to Enzyme-coding Genes
      R
      GNU General Public License v3.0
      0010Updated Dec 13, 2025Dec 13, 2025
    • hypeR

      Public
      An R Package for Geneset Enrichment Workflows
      R
      GNU General Public License v3.0
      1479100Updated Dec 11, 2025Dec 11, 2025
    • Integrated scRNAseq atlas of Breast Cancer
      HTML
      1330Updated Dec 4, 2025Dec 4, 2025
    • R
      0000Updated Nov 27, 2025Nov 27, 2025
    • CaDrA

      Public
      Candidate Drivers Analysis: Multi-Omic Search for Candidate Drivers of Functional Signatures
      R
      GNU General Public License v3.0
      12490Updated Oct 13, 2025Oct 13, 2025
    • .github

      Public
      0000Updated Sep 26, 2025Sep 26, 2025
    • BS831

      Public
      Course Materials for Genomics Data Mining
      HTML
      GNU General Public License v3.0
      112291Updated Sep 18, 2025Sep 18, 2025
    • HTML
      0000Updated Sep 12, 2025Sep 12, 2025
    • R
      0200Updated Aug 26, 2025Aug 26, 2025
    • R
      GNU General Public License v3.0
      0000Updated Jul 16, 2025Jul 16, 2025
    • A Nextflow Genome-Wide Association Study (GWAS) Pipeline
      R
      GNU General Public License v3.0
      223610Updated Jun 26, 2025Jun 26, 2025
    • R
      GNU General Public License v3.0
      0110Updated May 7, 2025May 7, 2025
    • A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data
      R
      GNU General Public License v3.0
      2430Updated Mar 31, 2025Mar 31, 2025
    • HTML
      0000Updated Mar 13, 2025Mar 13, 2025
    • R
      GNU General Public License v3.0
      0100Updated Sep 17, 2024Sep 17, 2024
    • Pipeliner upgraded for Nextflow DSL2 modules
      Nextflow
      GNU General Public License v3.0
      1310Updated Apr 9, 2024Apr 9, 2024
    • knnmi

      Public
      k-nearest neighbor mutual information estimator
      C++
      GNU General Public License v3.0
      0110Updated Mar 29, 2024Mar 29, 2024
    • Software engineering best practices for bioinformatics
      0000Updated Mar 13, 2024Mar 13, 2024
    • bieulergy

      Public
      Interactive analysis of multi-omics regulatory networks
      R
      GNU General Public License v3.0
      1130Updated Dec 18, 2023Dec 18, 2023
    • A web interface for interacting with the R package CaDrA
      HTML
      GNU General Public License v3.0
      0020Updated Dec 11, 2023Dec 11, 2023
    • A code repo for the PML project.
      HTML
      1000Updated Jun 29, 2023Jun 29, 2023