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@oxpig Oxford Protein Informatics Group

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    65 repositories

    • ABB4

      Public
      Antibody structure prediction model for sampling conformational ensembles
      Python
      •
      MIT License
      •2•6•0•0•Updated Apr 14, 2026Apr 14, 2026

    • ANARCII

      Public
      A language model suite for numbering antigen receptor sequences.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •6•43•14•6•Updated Apr 12, 2026Apr 12, 2026

    • syndirella

      Public
      Generates and scores synthetically tractable elaborations from fragment screens
      Python
      •
      MIT License
      •5•21•7•0•Updated Apr 9, 2026Apr 9, 2026

    • antibodymd

      Public
      repo for user friendly MD simulations
      Python
      •1•1•0•0•Updated Apr 8, 2026Apr 8, 2026

    • LICHEN

      Public
      Light-chain Immunoglobulin sequence generation Conditioned on the Heavy chain and Experimental Needs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•0•Updated Mar 31, 2026Mar 31, 2026

    • RLDiff

      Public
      Python
      •
      MIT License
      •0•8•1•0•Updated Mar 31, 2026Mar 31, 2026

    • ChemIQ

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •5•36•0•0•Updated Mar 26, 2026Mar 26, 2026

    • AEV-PLIG

      Public
      Python
      •
      Other
      •16•28•0•1•Updated Feb 27, 2026Feb 27, 2026

    • STCRpy

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•18•24•4•Updated Feb 12, 2026Feb 12, 2026

    • cond-semla

      Public
      Python
      •0•3•0•0•Updated Feb 11, 2026Feb 11, 2026

    • Tz_her2_affinity_and_beyond

      Public
      Design and refine high affinity antibody libraries
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•8•0•0•Updated Jan 12, 2026Jan 12, 2026

    • AntiFold

      Public
      Improved antibody structure-based design using inverse folding
      antibodyantibody-design
      antibodyantibody-design
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•160•2•0•Updated Dec 9, 2025Dec 9, 2025

    • AntiDIF

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•8•0•0•Updated Dec 8, 2025Dec 8, 2025

    • CDR_MD_simulations

      Public
      Supporting material and code for the manuscript: "Cagiada M, et.al., Uncovering the flexibility of CDR loops in antibodies and TCRs through large-scale molecula…
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Nov 28, 2025Nov 28, 2025

    • TNP

      Public
      Therapeutic Nanobody Profiler
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•21•0•1•Updated Nov 11, 2025Nov 11, 2025

    • ImmuneBuilder

      Public
      Predict the structure of immune receptor proteins
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •53•179•0•4•Updated Nov 11, 2025Nov 11, 2025

    • Humatch

      Public
      Fast, gene-specific joint humanisation of antibody heavy and light chains.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•21•0•0•Updated Nov 11, 2025Nov 11, 2025

    • intro-smolecules-design

      Public
      An introduction to small molecule drug design with practicals
      Jupyter Notebook
      •1•11•0•0•Updated Nov 11, 2025Nov 11, 2025

    • HeavyBuilder2

      Public
      A web app for HeavyBuilder2
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • ITsFlexible

      Public
      Prediction of Antibody CDR and protein loop flexibility
      Python
      •
      MIT License
      •5•17•0•0•Updated Sep 17, 2025Sep 17, 2025

    • PLAbDab_nano

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Aug 15, 2025Aug 15, 2025

    • attending-to-distance

      Public
      Python
      •0•4•0•0•Updated Jul 24, 2025Jul 24, 2025

    • SPACE2

      Public
      Tool for rapid clustering of antibody models by the structure of their CDRs.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•26•0•0•Updated Jul 14, 2025Jul 14, 2025

    • Graphinity

      Public
      Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •11•57•0•0•Updated Jul 9, 2025Jul 9, 2025

    • retromix

      Public
      Python
      •0•0•0•0•Updated May 21, 2025May 21, 2025

    • MolSnapper

      Public
      Python
      •
      MIT License
      •7•57•3•0•Updated May 9, 2025May 9, 2025

    • p-IgGen

      Public
      p-IgGen: A Generative Paired Antibody Language Model
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•13•0•0•Updated May 6, 2025May 6, 2025

    • ECFP-Sort-and-Slice

      Public
      Sort & Slice: A Simple and Superior Alternative to Hash-Based Folding for Extended-Connectivity Fingerprints (ECFPs)
      Jupyter Notebook
      •
      MIT License
      •6•9•0•0•Updated Feb 13, 2025Feb 13, 2025

    • CaLM

      Public
      Protein language model trained on coding DNA
      machine-learningdeep-learningcomputational-biology
      machine-learningdeep-learningcomputational-biologydnalanguage-modelscodonsprotein-language-modelllms
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •14•54•7•0•Updated Oct 20, 2024Oct 20, 2024

    • CoPriNet

      Public
      Deep learning for compound price prediction
      Python
      •
      MIT License
      •6•19•0•0•Updated Aug 22, 2024Aug 22, 2024
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