Repositories list

• MELLMA

  Public
  0•0•0•0•Updated Nov 21, 2025Nov 21, 2025

• scTriangulate

  Public
  scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions

  Python

  •

  MIT License

  •5•0•0•0•Updated Oct 9, 2025Oct 9, 2025

• awesome-single-cell

  Public
  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  MIT License

  •1.1k•0•0•0•Updated Aug 14, 2025Aug 14, 2025

• Hep2-Segmentation

  Public
  Benchmarking HEp-2 cell segmentation methods in indirect immunofluorescence images - Standard models to deep learning

  deep-learninggenerative-adversarial-networktransfer-learning+ 2image-segmentationhep-2-cells

  Python

  •

  The Unlicense

  •0•1•0•0•Updated Apr 26, 2025Apr 26, 2025

• OCPS

  Public
  Python

  •1•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• .github

  Public
  0•0•0•0•Updated Sep 22, 2023Sep 22, 2023

• basenji

  Public
  Sequential regulatory activity predictions with deep convolutional neural networks.

  Python

  •

  Apache License 2.0

  •135•0•0•0•Updated Jun 4, 2023Jun 4, 2023

• DeepImmuno

  Public
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity

  Jupyter Notebook

  •

  MIT License

  •30•0•0•0•Updated May 15, 2023May 15, 2023

• Applied-Deep-Learning

  Public
  Applied Deep Learning Course

  730•0•0•0•Updated Jan 28, 2023Jan 28, 2023

• awesome_spatial_omics

  Public
  tools and notes for spatial omics

  62•0•0•0•Updated Oct 23, 2022Oct 23, 2022

• deep-review

  Public
  A collaboratively written review paper on deep learning, genomics, and precision medicine

  HTML

  •

  Other

  •271•0•0•0•Updated Feb 21, 2022Feb 21, 2022

• Test-CNN

  Public
  Test-CNN-Models

  0•0•0•0•Updated Mar 5, 2020Mar 5, 2020