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@systemsbiology Institute for Systems Biology

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    23 repositories

    • slimseq

      Public
      Facility management software for high throughput sequencing
      Ruby
      •
      GNU General Public License v2.0
      •1•4•2•5•Updated Oct 19, 2022Oct 19, 2022

    • slimarray

      Public
      Lightweight software for microarray facility management
      Ruby
      •
      GNU General Public License v2.0
      •0•2•1•5•Updated Jun 17, 2022Jun 17, 2022

    • slimcore

      Public
      Shared resources for SLIMarray, SLIMseq, and future applications
      Ruby
      •1•3•0•3•Updated Jun 17, 2022Jun 17, 2022

    • array_pricer

      Public
      Public front-end wizard interface to find pricing, private back-end to manage pricing info
      Ruby
      •0•2•0•3•Updated Jun 17, 2022Jun 17, 2022

    • GMS

      Public
      Genome Management System
      Ruby
      •1•0•0•1•Updated Jun 26, 2020Jun 26, 2020

    • dsPyspark

      Public
      A Pyspark analysis module for Duplex Sequencing
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 5, 2018Sep 5, 2018

    • dswfFakeFASTQ

      Public
      Generate a FASTQ file for testing the Duplex-Sequencing workflow
      Python
      •0•1•0•0•Updated Dec 25, 2016Dec 25, 2016

    • kaviarApp

      Public
      Repository for mobile apps to interface with Kaviar - http://db.systemsbiology.net/kaviar/
      Objective-C
      •0•2•0•0•Updated Jun 2, 2016Jun 2, 2016

    • ISCA

      Public
      Inheritance State Consistency Analysis
      0•0•0•0•Updated Apr 19, 2016Apr 19, 2016

    • Duplex-Sequencing

      Public
      Python
      •
      Other
      •31•0•0•0•Updated Jan 3, 2016Jan 3, 2016

    • addama-redirect

      Public
      HTML
      •0•0•0•0•Updated Aug 7, 2015Aug 7, 2015

    • ftputils

      Public
      A subset of the FIleUtils and File APIs for FTP
      Ruby
      •
      MIT License
      •0•2•0•0•Updated Jun 19, 2015Jun 19, 2015

    • boatman-tasks

      Public
      Boatman tasks used in the ISB Microarray Facility
      Ruby
      •0•3•0•0•Updated May 30, 2012May 30, 2012

    • rest-scheduler

      Public
      A REST-like interface to rufus-scheduler
      Ruby
      •1•1•0•0•Updated Jul 15, 2011Jul 15, 2011

    • Jobba

      Public
      Job progress monitor with Rails 3 and SproutCore
      Ruby
      •0•1•0•0•Updated Jul 15, 2011Jul 15, 2011

    • slimcore_authorizer

      Public
      Authentication using RubyCAS-server and user and lab group management via SLIMcore
      Ruby
      •1•3•0•0•Updated Jul 13, 2011Jul 13, 2011

    • array_pipelines

      Public
      Microarray mini-pipelines with SLIMarray as a data source
      JavaScript
      •
      GNU General Public License v2.0
      •0•2•1•0•Updated Jul 8, 2011Jul 8, 2011

    • hybridization_scheduler

      Public
      Microarray hybridization scheduler using SproutCore and Ruby on Rails 3
      JavaScript
      •0•5•1•0•Updated Jul 7, 2011Jul 7, 2011

    • naming_schemer

      Public
      Rails plugin to manage naming schemes (controlled vocabulary) associated with samples
      Ruby
      •0•2•0•0•Updated Jul 6, 2011Jul 6, 2011

    • slimsolo_authorizer

      Public
      Authentication, users and lab groups within application database, for standalone deployment.
      Ruby
      •0•2•0•0•Updated Jul 6, 2011Jul 6, 2011

    • rubycas-server

      Public
      Provides a single sign-on solution for web applications, implementing the server-end of JA-SIG's CAS protocol.
      Ruby
      •
      Other
      •269•2•0•0•Updated Jun 3, 2011Jun 3, 2011

    • boatman

      Public
      Ruby DSL for ferrying around and manipulating files
      Ruby
      •
      MIT License
      •1•3•0•0•Updated Apr 19, 2011Apr 19, 2011

    • netzke-basepack

      Public
      Pre-built Netzke widgets for your RIA
      Ruby
      •71•2•0•0•Updated Oct 15, 2010Oct 15, 2010
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