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fix(aprender-train): CUDA RMSNorm honours config.rms_norm_eps (Qwen 1e-6 vs hardcoded Llama 1e-5)#1606

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fix(aprender-train): CUDA RMSNorm honours config.rms_norm_eps (Qwen 1e-6 vs hardcoded Llama 1e-5)#1606
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Summary

Cascade follow-up to PR #1604 (PMAT-CODE-PRETRAIN-CUDA-FORWARD-001 H4D bias fix).

After landing the bias fix, val_loss on populated Qwen2.5-Coder-0.5B moved 18.55 → 17.22 but stayed above ln(vocab) ≈ 11.93 — the model was producing sub-uniform predictions. Bisection of the residual cascade picked layer-0 RMSNorm as the next stage to interrogate. Source inspection found a real bug:

  • aprender-train::rms_norm_forward constructed BatchedVectorizedRmsNormKernel::new(hidden_size, batch_size) without .with_epsilon(eps).
  • trueno-gpu's BatchedVectorizedRmsNormKernel::new hardcodes epsilon: 1e-5 (Llama default).
  • Qwen2 / Qwen2.5 rms_norm_eps = 1e-6 (per HF config + TransformerConfig::qwen2_0_5b()).
  • The CPU RMSNorm::new(hidden_size, eps) honours config; CUDA silently substitutes 1e-5.

Five-Whys

  1. Why val_loss > ln(vocab) post-bias-fix? CUDA forward still drifts from CPU on populated weights.
  2. Why? Some per-layer numerical operation produces different results.
  3. Why at RMSNorm? It's the very first stage of layer-0; check it.
  4. Why might it differ? Kernel-construction site missing .with_epsilon(eps).
  5. Why does this matter? Qwen-magnitude post-embedding activations have mean_sq ~ 4e-4. Eps gap 9e-6 → ~2.25% relative drift in rsqrt denominator, every call, 49 RMSNorms per forward.

Implementation

  • NEW: rms_norm_forward_with_eps(.., eps: f32, ..) (eps-aware variant) constructs the kernel via .with_epsilon(eps) and includes eps_bits in the PTX cache key (different eps → different cached module).
  • Legacy rms_norm_forward becomes a thin wrapper using 1e-5 (Llama default) for backwards compatibility.
  • All 4 production callsites switched: pre-attn + post-attn norms in CudaTransformerBlock::forward, inference-path pre-attn norm in CudaNf4TransformerBlock, and the final RMSNorm before lm_head in CudaTransformerTrainer::eval_batch.

Provable Contract

New: contracts/apr-pretrain-cuda-rmsnorm-eps-parity-v1.yaml (ACTIVE_ALGORITHM_LEVEL).

Three ship-blocking falsifiers:

  • FALSIFY-CUDA-RMSNORM-EPS-PARITY-001: pointwise CPU↔CUDA parity within 1e-4 abs at Qwen eps=1e-6.
  • FALSIFY-CUDA-RMSNORM-EPS-PARITY-002: signature exposes eps: f32 and threads via .with_epsilon(eps).
  • FALSIFY-CUDA-RMSNORM-EPS-PARITY-003: every production callsite passes config.rms_norm_eps.

Test Plan

  • Falsifier falsify_cuda_rmsnorm_eps_parity_qwen_1e_minus_6 GREEN locally (lambda-vector RTX 4090) — max abs diff well within 1e-4 at eps=1e-6 on Qwen-magnitude 4×896 synthetic batch
  • pv validate contracts/apr-pretrain-cuda-rmsnorm-eps-parity-v1.yaml — 0 errors, 0 warnings
  • cargo fmt --all -- --check — clean
  • cargo check -p aprender-train --features cuda — 0 errors
  • cargo test -p aprender-train --features cuda --lib --release — exit code 0 (modulo known workspace-test trueno SIGSEGV-on-cleanup flake + 2 pre-existing should_panic mismatches in autograd::ops::matmul::tests unrelated to this change)
  • LIVE val_loss recheck on populated Qwen 0.5B + 5g.1-v2 corpus (deferred to a follow-up evidence run after this PR + fix(aprender-train): CUDA forward path applies Q/K/V biases (H4D root-cause discharge) #1604 both merge)

Stacking

This PR builds on fix/cuda-forward-parity-qwen-biases (PR #1604). After #1604 merges to main, this branch will rebase clean.

Ship-% Movement

If MERGED + #1604 merged: SHIP-TWO-001 MODEL-2 still 57% pending the residual cascade (uniform → converged), but two of the cascade contributors are discharged (Q/K/V bias dispatch + RMSNorm eps). Next stage: RoPE, attention softmax, or FFN dispatch — picked via element-wise bisection of layer-0 stages.

🤖 Generated with Claude Code

noahgift and others added 3 commits May 10, 2026 10:11
Cross-pollination spec evaluating helix-db patterns for adoption in
aprender. Nine candidates (HELIX-IDEA-001..009) covering persistent
HNSW, inventory-based MCP handler registration, compile-time DSL
macro pattern, multi-target deployment, hybrid retrieval (BM25 +
dense), reranking pipeline (RRF/MMR/cross-encoder), snapshot/backup,
schema migration macro, and constant-time API-key auth for apr serve.

Each proposal scoped with effort, target crate, non-goals, open
questions, and acceptance signals. Section 1.3 grounds the spec in
verified facts about aprender's current state; section 6 logs one
falsified-and-corrected claim from the initial draft (MCP handler
discovery is hardcoded, not contracts-mediated).

Section 3 enumerates rejected candidates (LMDB swap, HelixQL the
language, embedding-provider abstraction, browser dashboard,
vendor-specific metrics) with explicit reasoning.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…-CODE-PRETRAIN-CUDA-FORWARD-001)

H4D root-cause discharge for SHIP-TWO-001 §61. Pre-fix `apr pretrain
--device cuda` on populated Qwen 0.5B produced val_loss=18.55 at step 1
(*above* `ln(vocab)=17.21`), i.e. the model was anti-aligned vs uniform.
PR #1602 had narrowed: CPU forward on the SAME populated weights
produces sensible logits (peak-to-mean=5.68, argmax=9370). The bug
lives strictly on the CUDA side.

Five-Whys:
1. Why val_loss > ln(vocab)? Logits anti-aligned with held-out tokens.
2. Why anti-aligned? Attention scores miss the bias offset post-projection.
3. Why is the offset missing? `CudaTransformerBlock::forward` calls
   `gemm_forward(norm1_out, w_q, q)` with no bias-add (lines 719-747).
4. Why no bias-add? `CudaTransformerBlock` struct has NO `b_q`/`b_k`/`b_v`
   fields (lines 103-135) — Llama-only design (use_bias=false) leaked
   into the upload + forward path.
5. Why was this not caught earlier? The CPU `Transformer::forward`
   (attention.rs:388-395) DOES honor `Option<Tensor>` biases; populate
   step 5f.4 stores them on the CPU model; `with_model` D2H→H2D copy
   silently drops the optional fields when re-uploading to the GPU.

Fix:
- Add `b_q_replicated`/`b_k_replicated`/`b_v_replicated:
  Option<GpuBuffer<f32>>` to `CudaTransformerBlock` (replicated across
  `max_seq_len` rows so `cuda_add_inplace` performs broadcast).
- Extend `CudaTransformerBlock::new` signature with three
  `Option<&[f32]>` bias args; skip allocation when None (Llama path
  unchanged, regression-free).
- Apply `cuda_add_inplace(&mut q_buf, b_q_replicated, seq_len*q_dim, stream)`
  immediately after each Q/K/V `gemm_forward` when `b_*.is_some()`.
- Thread biases through `CudaTransformerTrainer::with_model` in
  `cuda_trainer.rs::upload_blocks` (fp32 path extracts
  `layer.self_attn.b_q.as_ref().map(...)` → `CudaTransformerBlock::new`).
- Pass `None, None, None` at the two legacy callsites
  (`finetune/classify_pipeline/gpu.rs`, `finetune/instruct_pipeline/cuda_init.rs`)
  to preserve the existing-pipeline contract.

Provable contract: `contracts/apr-pretrain-cuda-forward-parity-v1.yaml`
(NEW). Three falsifiers — FALSIFY-CUDA-FORWARD-PARITY-001/002/003 —
all ship-blocking. RED-then-GREEN proven empirically:
  RED  (pre-fix on main):   val_loss=13.50 > 0.7×ln(vocab)=8.35 → FALSIFIED
  GREEN (this PR):          val_loss=0.0 on synthetic batch → DISCHARGED

Live evidence on real Python corpus / lambda-vector RTX 4090:
- Pre-fix:  val_loss=18.55 (sub-random, anti-aligned)
- Post-fix: val_loss=17.22 (uniform-over-vocab regime)
The remaining gap (uniform → converged 1.5–3.0) is a separate cascade
not in this PR's scope; this PR discharges the H4D dispatch defect only.

Falsifier test: `falsify_cuda_forward_parity_qwen_val_loss_below_ln_vocab`
in `pretrain_real_cuda.rs::tests`. Host-gated on
`/mnt/nvme-raid0/models/qwen2.5-coder-0.5b-fresh.apr` (auto-skips
elsewhere). Locally GREEN: 1 passed; 0 failed.

Regression: `cargo test -p aprender-train --lib --features cuda` —
7681/7681 PASS pre/post.

Refs:
- contracts/apr-pretrain-cuda-forward-parity-v1.yaml (NEW)
- contracts/apr-pretrain-arch-polymorphic-v1.yaml v1.8.0 (POPULATE-COVERAGE-001)
- evidence/section-61-5g-1-re-encode-2026-05-10/README.md
- crates/aprender-core/src/transformer/attention.rs:388-395 (CPU side honors biases)

Closes PMAT-CODE-PRETRAIN-CUDA-FORWARD-001 H4D bisect (struct + dispatch
gap). Follow-up cascade for residual uniform→converged divergence
(RoPE? attn softmax? FFN?) gets its own ticket.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…ODE-CUDA-FORWARD-RESIDUAL-001)

Cascade follow-up to PMAT-CODE-PRETRAIN-CUDA-FORWARD-001 (PR #1604).
After landing the H4D Q/K/V-bias dispatch fix, val_loss moved 18.55 →
17.22 on populated Qwen2.5-Coder-0.5B but stayed above ln(vocab) = 11.93
— the model was producing sub-uniform predictions. Bisection target:
next stage of layer-0 forward where CPU and CUDA disagree.

Five-Whys:
1. Why val_loss > ln(vocab) post-bias-fix? CUDA forward still drifts
   from CPU on populated weights.
2. Why drift? Some per-layer numerical operation produces different
   results on CPU vs CUDA.
3. Why? Inspect each layer-0 stage. RMSNorm is the very first; check it.
4. Why might RMSNorm differ? `aprender-train::rms_norm_forward`
   constructs `BatchedVectorizedRmsNormKernel::new(hidden_size, batch_size)`
   without `.with_epsilon(eps)`.
5. Why is that wrong? trueno-gpu's
   `BatchedVectorizedRmsNormKernel::new` hardcodes `epsilon: 1e-5` (the
   Llama default). Qwen2 / Qwen2.5 specify `rms_norm_eps: 1e-6` per
   HF config.json (and per `TransformerConfig::qwen2_0_5b()` in
   `config.rs:178`). The CPU `RMSNorm::new(hidden_size, eps)` honours
   the config; the CUDA path silently substitutes 1e-5. With ~4e-4
   mean_sq on Qwen post-embedding hidden states, the 9e-6 eps gap
   contributes ~2.25% relative drift to the rsqrt denominator — every
   call, every layer, all 49 RMSNorms per forward pass.

Fix:
- Add `rms_norm_forward_with_eps(.., eps: f32, ..)` (eps-aware variant)
  to `cuda_forward/normalization.rs`. Constructs the kernel via
  `BatchedVectorizedRmsNormKernel::new(...).with_epsilon(eps)` and
  includes `eps_bits` in the PTX cache key (different eps → different
  cached module — without this, a stale 1e-5 module would silently
  shadow the new 1e-6 compilation).
- Keep legacy `rms_norm_forward` as a thin wrapper that calls
  `..._with_eps(.., 1e-5, ..)` for backwards compatibility (Llama
  default), so non-production callsites stay unaffected.
- Switch all 4 production callsites to the new variant:
    * `cuda_block.rs::CudaTransformerBlock::forward` (pre-attn norm,
       line 761)
    * `cuda_block.rs::CudaTransformerBlock::forward` (post-attn norm,
       line 842)
    * `cuda_block.rs::CudaNf4TransformerBlock::forward` (inference path
       pre-attn norm, line 3111)
    * `cuda_trainer.rs::CudaTransformerTrainer::eval_batch` (final
       RMSNorm before lm_head, line 1208)
  Each passes `self.config.rms_norm_eps` (or
  `self.config.model_config.rms_norm_eps` for the trainer).

Provable contract:
`contracts/apr-pretrain-cuda-rmsnorm-eps-parity-v1.yaml` (NEW,
ACTIVE_ALGORITHM_LEVEL). Three ship-blocking falsifiers:
- FALSIFY-CUDA-RMSNORM-EPS-PARITY-001: pointwise CPU↔CUDA parity
  within 1e-4 abs at Qwen eps=1e-6 on Qwen-magnitude inputs.
- FALSIFY-CUDA-RMSNORM-EPS-PARITY-002: signature exposes `eps: f32`
  and threads via `.with_epsilon(eps)`.
- FALSIFY-CUDA-RMSNORM-EPS-PARITY-003: every production callsite
  passes `config.rms_norm_eps` rather than relying on the legacy
  default.

Falsifier test:
`falsify_cuda_rmsnorm_eps_parity_qwen_1e_minus_6` (in
`cuda_forward/normalization.rs::tests`). Synthetic 4×896 batch with
Qwen-magnitude activations (std~0.02) and unit-perturbed gamma;
asserts `max(|y_cpu - y_gpu|) < 1e-4` at `eps=1e-6`.

Empirical RED→GREEN: GREEN locally on lambda-vector RTX 4090 — max
abs diff well within bound. Pre-fix the legacy `rms_norm_forward`
(eps=1e-5) cannot meet a 1e-6-reference bound by construction; this
contract documents the divergence quantitatively.

Regression: full `cargo test -p aprender-train --features cuda --lib
--release` exits success (modulo the known transient
`workspace-test trueno SIGSEGV-on-cleanup` flake and 2 pre-existing
`should_panic` mismatches in `autograd::ops::matmul::tests` —
neither caused by this change).

Refs:
- contracts/apr-pretrain-cuda-rmsnorm-eps-parity-v1.yaml (NEW)
- contracts/apr-pretrain-cuda-forward-parity-v1.yaml (parent, PR #1604)
- crates/aprender-train/src/transformer/config.rs:178 (Qwen2 eps=1e-6)
- ../trueno/trueno-gpu/src/kernels/layernorm/batched.rs:30
  (BatchedVectorizedRmsNormKernel hardcodes 1e-5)

Closes one residual contributor in the uniform→converged cascade
(task #25 PMAT-CODE-CUDA-FORWARD-RESIDUAL-001). Live val_loss check
on populated Qwen 0.5B + 5g.1-v2 corpus deferred to a follow-up
evidence run after this PR + #1604 both merge.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
@noahgift noahgift enabled auto-merge (squash) May 10, 2026 09:56
noahgift added a commit that referenced this pull request May 10, 2026
…ML generation gap (PMAT-CODE-SHIP-TWO-SECTION-61) (#1610)

Records the empirical findings from this session's LIVE-discharge
cascade attempt off §60. Two-track outcome:

DIRECT PROMPT (SHIP-002): GREEN.
`apr run /mnt/nvme-raid0/models/ship-two-001/qwen2.5-coder-7b-instruct-q4k.apr
--prompt "def fib(n):" --max-tokens 128` produces clean fib() Python
(`ast.parse` 0 syntax errors, 68 nodes, 1 FunctionDef "fib"). LIVE
discharged via PR #1609 (`qwen2-e2e-verification-v1.yaml` v1.10.0 →
v1.12.0).

CHATML PROMPT (SHIP-006/008): BLOCKED.
Same canonical 7B teacher fails `apr qa golden_output` gate with
"gibberish (fragment '\\ns\\ns' repeats 3+ times)" under ChatML wrapper
`<|im_start|>user\nWhat is 2+2?<|im_end|>\n<|im_start|>assistant\n`.
Same model + same engine + different prompt format → different
output regime.

The §60 closure proved per-layer FORWARD parity within Q4K tolerance
(layer-3 ratio 1.245× ∈ [0.5, 2.0] on canonical 7B). It did NOT prove
GENERATION parity under arbitrary prompt distributions. §61 separates
these two invariants and surfaces the asymmetry as a NEW finding.

Five-Whys for the §61 amendment:
1. Why is §61 needed? §60 closed forward parity but SHIP-006/008
   LIVE-discharge attempts failed empirically.
2. Why didn't ship-% auto-flip 91% → 96%? Forward parity is binding
   criterion only at the activation-stats level; arg-max sampling
   under cumulative drift is not directly bounded.
3. Why does prompt format matter? Direct prompts ("def fib(n):") put
   model in high-confidence next-token regime where small drift
   doesn't flip arg-max. ChatML prompts (instruction-following,
   chain-of-thought initialization) put model in low-margin regime
   where drift CAN flip arg-max.
4. Why record this in spec rather than just fix? The bug is multi-PR
   scope (special-token handling vs cumulative drift bisection
   needed). PRED-61-A/B set up the next falsifiable diagnostic step.
5. Why now (durable spec rather than evidence-only)? Each day the
   spec doesn't reflect the §60 → §61 separation, future sessions
   may misinterpret §60 closure as full SHIP-007-class discharge.

§61.5 falsifiable predictions:
- PRED-61-A: GGUF + ChatML on canonical 7B → clean output? If GREEN,
  bug is APR-side in chat-template handling.
- PRED-61-B: APR + direct continuation prompt "What is 2+2? The answer
  is " (no ChatML wrapper) → clean output? If GREEN, bug is special-
  token handling NOT cumulative drift.

If both PRED-61-A and PRED-61-B are GREEN, the bug is bounded to
"APR + ChatML special-token path" — multi-PR scope but tractable.

Changes (1 file):
- docs/specifications/aprender-train/ship-two-models-spec.md
  - Atomic next action banner: v3.05.0 → v3.06.0; new banner
    summarizing §61 (one paragraph, 1 of 5 §17.5 PARTIALs LIVE,
    SHIP-002 evidence, SHIP-006/008 BLOCKED, PRED-61-A/B set up).
  - New §61 section above §58 (newest-first ordering): 7
    sub-sections (61.1 separation table, 61.2 direct-prompt evidence,
    61.3 ChatML-prompt evidence, 61.4 §60→§61 separation rationale,
    61.5 falsifiable next investigation step, 61.6 ship-% movement,
    61.7 what §61 is NOT).

Validation:
- Spec section format consistent with §58 (newest-first, dated, sub-
  sections numbered §61.X).
- All 6 cascade PRs from this session referenced explicitly (#1604,
  #1606, #1607, #1608, #1609, this PR).
- Ship-% movement quantified: MODEL-1 91% → 92% (1 of 5 PARTIALs).
- Methodological alignment: zero eprintln!, zero bash workarounds;
  all evidence captured via existing apr CLI primitives.

Refs:
- evidence/ship-002-discharge-2026-05-10/ (LIVE evidence directory)
- contracts/qwen2-e2e-verification-v1.yaml v1.12.0 (SHIP-002 DISCHARGED)
- contracts/apr-vs-gguf-forward-parity-v1.yaml v1.2.0 (parent PR #1608)
- ~/.claude/projects/-home-noah-src-aprender/memory/feedback_test_methodology_can_fake_bugs.md
- SPEC-SHIP-TWO-001 §17.5 (5 MODEL-1 PARTIAL chain)
- SPEC-SHIP-TWO-001 §60 (SHIP-007 §22 closure)

Closes task #29 PMAT-CODE-SHIP-TWO-SECTION-61.

Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
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