Search results

Difference in number of residues and PAE vector.

Status: Open.

#24 In phbradley/TCRdock;

· mapo9 opened on Apr 17, 2025

AlphaFold3

Status: Open.

#23 In phbradley/TCRdock;

· wangjiawen2013 opened on Mar 12, 2025

Change MHCII peptide length

Status: Open.

#22 In phbradley/TCRdock;

· ohyesweilun opened on Jan 31, 2025

Importing TCR Sequences Without V, J, CDR3 Names for Predicted PAE Binding Prediction

Status: Open.

#21 In phbradley/TCRdock;

· kanyuanhao opened on May 30, 2024

Using Cryo-EM structures in TCRdock

Status: Open.

#20 In phbradley/TCRdock;

· andreas-wilm opened on May 3, 2024

<code>run_prediction.py</code> output PDB files do not contain multiple chains

Status: Open.

#19 In phbradley/TCRdock;

· kamurani opened on Apr 19, 2024

<code>.pdb</code> files in model output should have <code>pLDDT</code> scores stored in <code>b_factor</code> column

Status: Open.

#18 In phbradley/TCRdock;

· kamurani opened on Apr 19, 2024

<code>run_prediction.py</code> should have an <code>--output-dir</code> option

Status: Open.

#17 In phbradley/TCRdock;

· kamurani opened on Apr 19, 2024

<code>BiopythonDeprecationWarning</code> in <code>tcrdock/sequtil.py</code>

Status: Open.

#15 In phbradley/TCRdock;

· kamurani opened on Apr 12, 2024

how to run "run_prediction.py" in a alphafold docker instance?

Status: Open.

#14 In phbradley/TCRdock;

· patycake57 opened on Mar 8, 2024

"Conda env" is not working

Status: Open.

#12 In phbradley/TCRdock;

· HonglanLi opened on Jan 9, 2024

Which parameters to use?

Status: Open.

#11 In phbradley/TCRdock;

· eliasball opened on Dec 11, 2023