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psathyrella / partis Public

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WIP: Add bcrlarch to cf-paired-loci phylo benchmarking framework#336

Draft

davidrich27 wants to merge 5 commits intopsathyrella:mainpsathyrella/partis:mainfrom

matsengrp:benchmark-add-bcrlarchmatsengrp/partis:benchmark-add-bcrlarchCopy head branch name to clipboard

Conversation Commits5 (5)Checks Files changed

Draft

WIP: Add bcrlarch to cf-paired-loci phylo benchmarking framework#336
davidrich27 wants to merge 5 commits intopsathyrella:mainfrom
matsengrp:benchmark-add-bcrlarch

Commits

Commits on Feb 12, 2026

added pixi env, bcrlarch-runner to cf-paired-loci benchmark as patch
davidrich27
committed
calling bcrlarch with parsimony -> bcrlarch-pars in benchmark.
davidrich27
committed

Commits on Feb 13, 2026

updates to tests to include bcrlarch
davidrich27
committed
Fix scan cmd None handling and add bcrlarch-pars to N-padding removal

davidrich27
and
claude
committed
Integrate smoke test into run-benchmark.sh

davidrich27
and
claude
committed

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