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Add examples for Bioengineering/SynBio projects #486

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8 changes: 8 additions & 0 deletions docs/example_gallery.rst
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Expand Up @@ -22,3 +22,11 @@ The below examples use the extra dependency `teemi <https://github.com/hiyama341

* `Example_HT_cazyme_primer_design <https://github.com/hiyama341/cazyme_primer_design/blob/main/notebooks/00-cazyme_primer_design.ipynb>`_: Design primers for a high-throughput CAZyme library.
* `Example_designing_primers_for_kozak_library <https://github.com/hiyama341/teemi/blob/main/colab_notebooks/09_2_BUILD_Combinatorial_library.ipynb>`_: We explore the combinatorial space of the most abundant kozak sequences and make repair-primers for the experiments.


Bioengineering/SynBio projects where you can apply pydna
--------------------------------------------------------

* `02 Primer directed mutagenesis with pydna <https://github.com/hiyama341/teemi/blob/main/teemi_cad_workflows/notebooks/02_primer_directed_mutagenesis.ipynb>`_
* `03 Investigate plastic-degrading enzymes with pydna <https://github.com/hiyama341/teemi/blob/main/teemi_cad_workflows/notebooks/03_investigate_plastic_degrading_enzymes.ipynb>`_
* `04 Promoter library design in *Saccharomyces cerevisiae* <https://github.com/hiyama341/teemi/blob/main/teemi_cad_workflows/notebooks/04_promoter_library_design_in_s_cerevisiae.ipynb>`_
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