Add JET tests

[ErikQQY]

Part of #442

[ErikQQY]

From local testing, it seems the current changes are sufficient to pass JET analysis.

julia> JET.test_package(QuantumOptics; target_defined_modules=true)
Test Passed

[Krastanov]

Neat! This was easier than expected, but great nonetheless. Could you let me know why you need the QuantumOpticsBase. prepended to coherentspinstate? If I am reading this correctly, coherentspinstate is already imported at the start of the file.

[Krastanov]

Also, could you rename the file to test_jet.jl, same as discussed in the other PR?

The failures are probably because the file was not explicitly included in runtests.jl

[ErikQQY]

Could you let me know why you need the QuantumOpticsBase. prepended to coherentspinstate? If I am reading this correctly, coherentspinstate is already imported at the start of the file.

Actually, these changes should be in the Aqua PR, most of them are related to the type piracy error with Aqua, I will move them there to keep this PR clean.

[Krastanov]

whoops, you added the Manifest.toml to the commit (I guess we never bothered adding it to .gitignore). Could you please remove it?

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 97.35%. Comparing base (d2c71fe) to head (49df2ea).
Report is 31 commits behind head on master.

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #446      +/-   ##
==========================================
+ Coverage   97.03%   97.35%   +0.31%     
==========================================
  Files          18       18              
  Lines        1554     1700     +146     
==========================================
+ Hits         1508     1655     +147     
+ Misses         46       45       -1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.