Update from update/software-2025-07-06

database/github/IFCA-Advanced-Computing/FAIR_eva/metadata.json

@@ -0,0 +1,36 @@
+{
+    "parser": "github",
+    "uid": "github/IFCA-Advanced-Computing/FAIR_eva",
+    "url": "https://github.com/IFCA-Advanced-Computing/FAIR_eva",
+    "data": {
+        "doi": "10.1038/s41597-023-02652-8",
+        "name": "FAIR_eva",
+        "url": "https://github.com/IFCA-Advanced-Computing/FAIR_eva",
+        "full_name": "IFCA-Advanced-Computing/FAIR_eva",
+        "html_url": "https://github.com/IFCA-Advanced-Computing/FAIR_eva",
+        "created_at": "2023-10-09T11:17:47Z",
+        "updated_at": "2025-03-26T13:33:52Z",
+        "clone_url": "https://github.com/IFCA-Advanced-Computing/FAIR_eva.git",
+        "size": 5881,
+        "stargazers_count": 2,
+        "watchers_count": 2,
+        "language": "Python",
+        "open_issues_count": 5,
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 5,
+        "owner": {
+            "html_url": "https://github.com/IFCA-Advanced-Computing",
+            "avatar_url": "https://avatars.githubusercontent.com/u/2565514?v=4",
+            "login": "IFCA-Advanced-Computing",
+            "type": "Organization"
+        },
+        "timestamp": "2025-07-06 01:01:05.079915",
+        "avatar": "https://avatars.githubusercontent.com/u/2565514?v=4"
+    }
+}

database/github/JakobRoche/OCSVM-Transit-Detection/metadata.json

@@ -0,0 +1,32 @@
+{
+    "parser": "github",
+    "uid": "github/JakobRoche/OCSVM-Transit-Detection",
+    "url": "https://github.com/JakobRoche/OCSVM-Transit-Detection",
+    "data": {
+        "doi": [
+            "https://ui.adsabs.harvard.edu/abs/2024OJAp....7E..62R",
+            "https://ui.adsabs.harvard.edu/abs/2025ascl.soft06013R/abstract"
+        ],
+        "title": "OCSVM-Transit-Detection: One-Class SVM model for exoplanet transit detection",
+        "url": "https://github.com/JakobRoche/OCSVM-Transit-Detection",
+        "name": "OCSVM-Transit-Detection",
+        "full_name": "JakobRoche/OCSVM-Transit-Detection",
+        "html_url": "https://github.com/JakobRoche/OCSVM-Transit-Detection",
+        "description": "The source code for a One-Class SVM model designed to detect exoplanet transit events.",
+        "created_at": "2024-07-18T17:35:22Z",
+        "updated_at": "2025-05-09T22:38:03Z",
+        "clone_url": "https://github.com/JakobRoche/OCSVM-Transit-Detection.git",
+        "homepage": "https://arxiv.org/abs/2407.00504",
+        "size": 11,
+        "language": "Python",
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/JakobRoche",
+            "avatar_url": "https://avatars.githubusercontent.com/u/175963631?v=4",
+            "login": "JakobRoche",
+            "type": "User"
+        },
+        "timestamp": "2025-07-06 01:00:15.704055",
+        "avatar": "https://avatars.githubusercontent.com/u/175963631?v=4"
+    }
+}

database/github/KCL-BMEIS/NiftySeg/metadata.json

@@ -0,0 +1,42 @@
+{
+    "parser": "github",
+    "uid": "github/KCL-BMEIS/NiftySeg",
+    "url": "https://github.com/KCL-BMEIS/NiftySeg",
+    "data": {
+        "title": "NiftySeg",
+        "url": "https://github.com/KCL-BMEIS/NiftySeg",
+        "credit": [],
+        "tags": [
+            "image-analysis-libraries",
+            "visualization"
+        ],
+        "description": "contains programs to perform EM based segmentation of images in nifti or analyse format.",
+        "name": "NiftySeg",
+        "full_name": "KCL-BMEIS/NiftySeg",
+        "html_url": "https://github.com/KCL-BMEIS/NiftySeg",
+        "created_at": "2018-05-22T14:00:45Z",
+        "updated_at": "2025-05-22T14:39:13Z",
+        "clone_url": "https://github.com/KCL-BMEIS/NiftySeg.git",
+        "size": 5170,
+        "stargazers_count": 29,
+        "watchers_count": 29,
+        "language": "C++",
+        "open_issues_count": 3,
+        "license": {
+            "key": "bsd-3-clause",
+            "name": "BSD 3-Clause \"New\" or \"Revised\" License",
+            "spdx_id": "BSD-3-Clause",
+            "url": "https://api.github.com/licenses/bsd-3-clause",
+            "node_id": "MDc6TGljZW5zZTU="
+        },
+        "subscribers_count": 3,
+        "owner": {
+            "html_url": "https://github.com/KCL-BMEIS",
+            "avatar_url": "https://avatars.githubusercontent.com/u/39486397?v=4",
+            "login": "KCL-BMEIS",
+            "type": "Organization"
+        },
+        "timestamp": "2025-07-06 01:04:09.279890",
+        "avatar": "https://avatars.githubusercontent.com/u/39486397?v=4"
+    }
+}

database/github/LauraHerold/pinc/metadata.json

@@ -0,0 +1,33 @@
+{
+    "parser": "github",
+    "uid": "github/LauraHerold/pinc",
+    "url": "https://github.com/LauraHerold/pinc",
+    "data": {
+        "doi": [
+            "https://ui.adsabs.harvard.edu/abs/2025PhRvD.111h3504H",
+            "https://ui.adsabs.harvard.edu/abs/2025ascl.soft06023H/abstract"
+        ],
+        "title": "pinc: Compute profile likelihoods in cosmology",
+        "url": "https://github.com/LauraHerold/pinc",
+        "name": "pinc",
+        "full_name": "LauraHerold/pinc",
+        "html_url": "https://github.com/LauraHerold/pinc",
+        "description": "Simple simulated-annealing minimization for computing profile likelihoods in cosmology",
+        "created_at": "2024-05-22T13:10:53Z",
+        "updated_at": "2025-04-03T14:55:42Z",
+        "clone_url": "https://github.com/LauraHerold/pinc.git",
+        "size": 3068,
+        "stargazers_count": 1,
+        "watchers_count": 1,
+        "language": "Jupyter Notebook",
+        "subscribers_count": 2,
+        "owner": {
+            "html_url": "https://github.com/LauraHerold",
+            "avatar_url": "https://avatars.githubusercontent.com/u/28920885?v=4",
+            "login": "LauraHerold",
+            "type": "User"
+        },
+        "timestamp": "2025-07-06 01:00:10.022127",
+        "avatar": "https://avatars.githubusercontent.com/u/28920885?v=4"
+    }
+}

database/github/Ohervet/Bjet_MCMC/metadata.json

@@ -0,0 +1,40 @@
+{
+    "parser": "github",
+    "uid": "github/Ohervet/Bjet_MCMC",
+    "url": "https://github.com/Ohervet/Bjet_MCMC",
+    "data": {
+        "doi": [
+            "https://ui.adsabs.harvard.edu/abs/2024ApJ...962..140H",
+            "https://ui.adsabs.harvard.edu/abs/2025ascl.soft06021H/abstract"
+        ],
+        "title": "Bjet_MCMC: Model multiwavelength spectral energy distributions of blazars",
+        "url": "https://github.com/Ohervet/Bjet_MCMC",
+        "name": "Bjet_MCMC",
+        "full_name": "Ohervet/Bjet_MCMC",
+        "html_url": "https://github.com/Ohervet/Bjet_MCMC",
+        "description": "Bjet_MCMC is a tool to to automatically model multiwavelength spectral energy distributions of blazars, considering one-zone synchrotron-self-Compton (SSC) model with or without the addition of external inverse-Compton process from the thermal emission of the nucleus. It also contains manual fitting functionalities for multi-zone SSC modeling. ",
+        "created_at": "2022-09-22T19:14:33Z",
+        "updated_at": "2025-07-02T03:46:02Z",
+        "clone_url": "https://github.com/Ohervet/Bjet_MCMC.git",
+        "size": 21556,
+        "stargazers_count": 13,
+        "watchers_count": 13,
+        "language": "C++",
+        "license": {
+            "key": "bsd-3-clause",
+            "name": "BSD 3-Clause \"New\" or \"Revised\" License",
+            "spdx_id": "BSD-3-Clause",
+            "url": "https://api.github.com/licenses/bsd-3-clause",
+            "node_id": "MDc6TGljZW5zZTU="
+        },
+        "subscribers_count": 8,
+        "owner": {
+            "html_url": "https://github.com/Ohervet",
+            "avatar_url": "https://avatars.githubusercontent.com/u/52715983?v=4",
+            "login": "Ohervet",
+            "type": "User"
+        },
+        "timestamp": "2025-07-06 01:00:11.154499",
+        "avatar": "https://avatars.githubusercontent.com/u/52715983?v=4"
+    }
+}

database/github/Ompha/CLUES/metadata.json

@@ -0,0 +1,40 @@
+{
+    "parser": "github",
+    "uid": "github/Ompha/CLUES",
+    "url": "https://github.com/Ompha/CLUES",
+    "data": {
+        "doi": [
+            "https://ui.adsabs.harvard.edu/abs/2025ApJS..276...65L",
+            "https://ui.adsabs.harvard.edu/abs/2025ascl.soft06022L/abstract"
+        ],
+        "title": "CLUES: Clustering tool for analyzing spectral data",
+        "url": "https://github.com/Ompha/CLUES",
+        "name": "CLUES",
+        "full_name": "Ompha/CLUES",
+        "html_url": "https://github.com/Ompha/CLUES",
+        "description": "CLustering UnsupErvised with Sequencer: A fully interpretable clustering tool for analyzing spectral data ",
+        "created_at": "2024-06-26T12:36:27Z",
+        "updated_at": "2025-03-20T01:24:16Z",
+        "clone_url": "https://github.com/Ompha/CLUES.git",
+        "size": 3731,
+        "stargazers_count": 1,
+        "watchers_count": 1,
+        "language": "Jupyter Notebook",
+        "license": {
+            "key": "gpl-3.0",
+            "name": "GNU General Public License v3.0",
+            "spdx_id": "GPL-3.0",
+            "url": "https://api.github.com/licenses/gpl-3.0",
+            "node_id": "MDc6TGljZW5zZTk="
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/Ompha",
+            "avatar_url": "https://avatars.githubusercontent.com/u/12269235?v=4",
+            "login": "Ompha",
+            "type": "User"
+        },
+        "timestamp": "2025-07-06 01:00:10.621755",
+        "avatar": "https://avatars.githubusercontent.com/u/12269235?v=4"
+    }
+}

database/github/Rbfinch/grepq/metadata.json

@@ -0,0 +1,51 @@
+{
+    "parser": "github",
+    "uid": "github/Rbfinch/grepq",
+    "url": "https://github.com/Rbfinch/grepq",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.15612061",
+        "name": "grepq",
+        "url": "https://github.com/Rbfinch/grepq",
+        "full_name": "Rbfinch/grepq",
+        "html_url": "https://github.com/Rbfinch/grepq",
+        "description": "quickly filter fastq files by matching sequences to a set of regex patterns",
+        "created_at": "2024-11-03T06:05:35Z",
+        "updated_at": "2025-07-05T01:54:44Z",
+        "clone_url": "https://github.com/Rbfinch/grepq.git",
+        "homepage": "https://github.com/Rbfinch/grepq",
+        "size": 4555,
+        "stargazers_count": 54,
+        "watchers_count": 54,
+        "language": "Rust",
+        "open_issues_count": 2,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/Rbfinch",
+            "avatar_url": "https://avatars.githubusercontent.com/u/181547594?v=4",
+            "login": "Rbfinch",
+            "type": "User"
+        },
+        "topics": [
+            "bioinformatics",
+            "fastq",
+            "grep",
+            "grep-like",
+            "grep-search",
+            "grepping",
+            "gzip",
+            "json",
+            "regex",
+            "sqlite",
+            "zstd"
+        ],
+        "timestamp": "2025-07-06 01:00:41.669700",
+        "avatar": "https://avatars.githubusercontent.com/u/181547594?v=4"
+    }
+}

database/github/TeamNCMC/cuisto/metadata.json

@@ -0,0 +1,37 @@
+{
+    "parser": "github",
+    "uid": "github/TeamNCMC/cuisto",
+    "url": "https://github.com/TeamNCMC/cuisto",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.15684283",
+        "name": "cuisto",
+        "url": "https://github.com/TeamNCMC/cuisto",
+        "full_name": "TeamNCMC/cuisto",
+        "html_url": "https://github.com/TeamNCMC/cuisto",
+        "description": "Quantify histological data",
+        "created_at": "2024-11-19T13:28:42Z",
+        "updated_at": "2025-07-04T08:09:11Z",
+        "clone_url": "https://github.com/TeamNCMC/cuisto.git",
+        "homepage": "https://teamncmc.github.io/cuisto/",
+        "size": 92445,
+        "stargazers_count": 5,
+        "watchers_count": 5,
+        "language": "Python",
+        "open_issues_count": 2,
+        "license": {
+            "key": "mit",
+            "name": "MIT License",
+            "spdx_id": "MIT",
+            "url": "https://api.github.com/licenses/mit",
+            "node_id": "MDc6TGljZW5zZTEz"
+        },
+        "owner": {
+            "html_url": "https://github.com/TeamNCMC",
+            "avatar_url": "https://avatars.githubusercontent.com/u/186301548?v=4",
+            "login": "TeamNCMC",
+            "type": "Organization"
+        },
+        "timestamp": "2025-07-06 01:00:38.413125",
+        "avatar": "https://avatars.githubusercontent.com/u/186301548?v=4"
+    }
+}

database/github/ZhiweiWei-NAMI/AirFogSim/metadata.json

@@ -0,0 +1,35 @@
+{
+    "parser": "github",
+    "uid": "github/ZhiweiWei-NAMI/AirFogSim",
+    "url": "https://github.com/ZhiweiWei-NAMI/AirFogSim",
+    "data": {
+        "doi": "https://doi.org/10.5281/zenodo.15779001",
+        "name": "AirFogSim",
+        "url": "https://github.com/ZhiweiWei-NAMI/AirFogSim",
+        "full_name": "ZhiweiWei-NAMI/AirFogSim",
+        "html_url": "https://github.com/ZhiweiWei-NAMI/AirFogSim",
+        "created_at": "2023-12-24T08:47:54Z",
+        "updated_at": "2025-07-04T02:51:27Z",
+        "clone_url": "https://github.com/ZhiweiWei-NAMI/AirFogSim.git",
+        "size": 307732,
+        "stargazers_count": 33,
+        "watchers_count": 33,
+        "language": "Python",
+        "license": {
+            "key": "apache-2.0",
+            "name": "Apache License 2.0",
+            "spdx_id": "Apache-2.0",
+            "url": "https://api.github.com/licenses/apache-2.0",
+            "node_id": "MDc6TGljZW5zZTI="
+        },
+        "subscribers_count": 1,
+        "owner": {
+            "html_url": "https://github.com/ZhiweiWei-NAMI",
+            "avatar_url": "https://avatars.githubusercontent.com/u/153070550?v=4",
+            "login": "ZhiweiWei-NAMI",
+            "type": "User"
+        },
+        "timestamp": "2025-07-06 01:00:40.655704",
+        "avatar": "https://avatars.githubusercontent.com/u/153070550?v=4"
+    }
+}

database/github/awmann/M_-M_K-/metadata.json

@@ -0,0 +1,34 @@
+{
+    "parser": "github",
+    "uid": "github/awmann/M_-M_K-",
+    "url": "https://github.com/awmann/M_-M_K-",
+    "data": {
+        "doi": [
+            "https://ui.adsabs.harvard.edu/abs/2021PSJ.....2....1A",
+            "https://ui.adsabs.harvard.edu/abs/2019ApJ...871...63M",
+            "https://ui.adsabs.harvard.edu/abs/2025ascl.soft06014M/abstract"
+        ],
+        "title": "M_-M_K-: Estimate masses and uncertainties from M_Ks (2MASS Ks + distance)",
+        "url": "https://github.com/awmann/M_-M_K-",
+        "name": "M_-M_K-",
+        "full_name": "awmann/M_-M_K-",
+        "html_url": "https://github.com/awmann/M_-M_K-",
+        "description": "Code for estimating realistic masses and uncertainties from M_Ks (2MASS Ks + distance)",
+        "created_at": "2018-04-14T01:11:39Z",
+        "updated_at": "2025-04-14T22:17:21Z",
+        "clone_url": "https://github.com/awmann/M_-M_K-.git",
+        "size": 441246,
+        "stargazers_count": 8,
+        "watchers_count": 8,
+        "language": "IDL",
+        "subscribers_count": 3,
+        "owner": {
+            "html_url": "https://github.com/awmann",
+            "avatar_url": "https://avatars.githubusercontent.com/u/6567968?v=4",
+            "login": "awmann",
+            "type": "User"
+        },
+        "timestamp": "2025-07-06 01:00:15.181768",
+        "avatar": "https://avatars.githubusercontent.com/u/6567968?v=4"
+    }
+}