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Bump PyHMMER to recent release to fix performance issues

Status: Open.

#80 In rtviii/riboxyz;

· althonos opened on Mar 5, 2025

Split services: neo4j, ribctl and api

∾⋘⋜∷⋮CURRENT ⋮∷⋩⋙∽

Status: Open.

#79 In rtviii/riboxyz;

· rtviii opened on Feb 7, 2025

Integrate r2dt for rna chain viewing

enhancementNew feature or requestNew feature or request

Status: Open.

#78 In rtviii/riboxyz;

· rtviii opened on Nov 14, 2024

Landmarks

[Landmarks]

enhancementNew feature or requestNew feature or request

research_time

Status: Open.

#71 In rtviii/riboxyz;

· rtviii opened on Jul 13, 2024

Whole-structure organism designation: make sure the method is in sync with with RCSB

Status: Open.

#70 In rtviii/riboxyz;

· rtviii opened on Jul 10, 2024

4TUD fails on polymers

bugSomething isn't workingSomething isn't working

next_step

Status: Open.

#67 In rtviii/riboxyz;

· rtviii opened on Jun 16, 2024

PTC via tRNA locations [instead of fuzzy finding Doris et al. 2015 sequences]

enhancementNew feature or requestNew feature or request

research_time

Status: Open.

#62 In rtviii/riboxyz;

· rtviii opened on Jun 12, 2024

Fetch other polymers from the db too.

bugSomething isn't workingSomething isn't working

Status: Open.

#59 In rtviii/riboxyz;

· rtviii opened on Jun 6, 2024

Dial in the sort by feature

next_step

Status: Open.

#55 In rtviii/riboxyz;

· rtviii opened on May 28, 2024

enum_union

Status: Open.

#31 In rtviii/riboxyz;

· rtviii opened on Dec 20, 2023

Cluster HMM fasta seed seq repos and verify that outliers are indeed phylogenetic in origin.

Status: Open.

#26 In rtviii/riboxyz;

· rtviii opened on Oct 4, 2023

Make sure the taxonomic_correction to the dynamic HMMs produces models with same number of seed sequences

formally_unsound

Status: Open.

#22 In rtviii/riboxyz;

· rtviii opened on Sep 28, 2023