Install dependencies:
ViennaRNA
conda install viennarna
Infernal
conda install -c bioconda infernal
Download code and prepare Rfam database
wget https://github.com/sahakyanhk/ares/archive/refs/heads/main.zip -O ares.zip; unzip ares.zip
bash ares/src/make_rfam_db.sh
python src/ares.py
python src/ares.py --nobackup -iseq random --random_seq_len 90 -o test/run1 -ps 100 -ng 500 -ed rna -em single_chain -b 1
python src/arestools.py -l test/run1/progress.log -o test/run1
or submit a sbatch job with SLURM:
bash run_ares.sbatch test/run