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1.2.6 - Pyrenean Mountain Dog (patch 6)

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@muffato muffato released this 24 Jul 19:43
1.2.6
81d6e1c
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Learn about vigilant mode.

Enhancements & fixes

  • Upgraded the versions of FastK and MerquryFK to address some segmentation-fault issues.
  • Upgraded the version of the NCBI datasets CLI and implemented a retry-and-backoff strategy
    to avoid overwhelming the server.

Software dependencies

Note, since the pipeline is using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference. Only Docker or Singularity containers are supported, conda is not supported.

Dependency Old version New version
datasets 15.12.0 16.22.1
fastk 1.2 ddea6cf254f378db51d22c6eb21af775fa9e1f77
merquryfk 1.2 4578fc778098859d78cab5e4b78b27b9a9dd10a4
Assets 2
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