Added option visium_hex with which Visium spots are rendered as continous hexes
#989
Workflow file for this run
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| name: Test | |
| on: | |
| push: | |
| branches: [main] | |
| tags: ["v*"] # Push events to matching v*, i.e. v1.0, v20.15.10 | |
| pull_request: | |
| branches: ["*"] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| env: ["dev-py311", "dev-py313"] | |
| # Configure pytest-xdist | |
| env: | |
| OMP_NUM_THREADS: "1" | |
| OPENBLAS_NUM_THREADS: "1" | |
| MKL_NUM_THREADS: "1" | |
| NUMEXPR_MAX_THREADS: "1" | |
| MPLBACKEND: "agg" | |
| DISPLAY: ":42" | |
| PYTEST_ADDOPTS: "-n auto --dist=load --durations=10" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # Cache rattler's shared package cache (speeds up downloads) | |
| - name: Restore rattler cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/rattler | |
| key: rattler-${{ runner.os }}-${{ matrix.env }}-${{ hashFiles('pyproject.toml') }} | |
| restore-keys: | | |
| rattler-${{ runner.os }}-${{ matrix.env }}- | |
| rattler-${{ runner.os }}- | |
| # Install pixi and the requested environment | |
| - uses: prefix-dev/[email protected] | |
| with: | |
| environments: ${{ matrix.env }} | |
| # We're not comitting the pixi-lock file | |
| locked: false | |
| cache: false | |
| activate-environment: ${{ matrix.env }} | |
| - name: Show versions | |
| run: | | |
| python --version | |
| pixi --version | |
| - name: Run tests | |
| env: | |
| MPLBACKEND: agg | |
| DISPLAY: ":42" | |
| run: | | |
| pytest -v --cov --color=yes --cov-report=xml | |
| - name: Archive figures generated during testing | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: visual_test_results_${{ matrix.env }} | |
| path: /home/runner/work/spatialdata-plot/spatialdata-plot/tests/figures/* | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| name: coverage | |
| verbose: true | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |