Release v0.5.1

[adamrtalbot]

Release v0.5.1

Changes

• Fixed: Documentation admonition formatting issues
• Fixed: Clarified required bot roles in documentation

Files Updated

• build.gradle — version bumped to 0.5.1
• README.md, docs/index.md, docs/CONTRIBUTING.md, docs/getting-started/setup.md — version references
• example/nextflow.config, example/configs/01-07 — plugin version references
• CHANGELOG.md — release notes for v0.5.1

Release Automation

When this PR is merged to main, the GitHub Actions workflow will automatically:

• ✅ Publish plugin to Nextflow Plugin Registry
• ✅ Create git tag v0.5.1
• ✅ Create GitHub release with changelog notes

Checklist

• Version updated in build.gradle
• Version references updated in documentation files
• CHANGELOG.md updated with release notes
• Tests passing
• Documentation updated (if needed)

[claude]

Review: Release v0.5.1

This is a clean release PR — version bumps are consistent across all files (build.gradle, README, docs, all example configs).

One concern: The CHANGELOG and PR description both claim two fixes were included:

• Documentation admonition formatting fixes
• Clarified required bot roles

However, neither of these content changes appear in the diff. Only version numbers were changed. If these fixes were merged separately before this PR (e.g., directly to main or via a prior PR), that's fine — but the CHANGELOG entry describes changes that aren't traceable to this PR, which is misleading.

Tests: The checklist shows "Tests passing" unchecked. For a doc-only patch release this may be acceptable, but worth confirming CI is green before merge.

Summary: Version bumps are complete and correct. Clarify whether the documented fixes are included here or if they were in a prior commit, and confirm CI status.