optimizations - #29

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knokknok wants to merge 4 commits into

snakemake-workflows:mainfrom

Commits on May 5, 2021

replace combinegvcfs with faster genomicsdbimport
knokknok
committed
8746daf
use strongly recommanded format for hard filtering (https://gatk.broadinstitute.org/hc/en-us/articles/360057440031-VariantFiltration)
knokknok
committed
45c247b
switch to faster Bwa-mem2
knokknok
committed
8646b6b
fix for #27
knokknok
committed
e2c998f