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feat: add devcontainer #19

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feat: add devcontainer #19

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dd3d919
feat: add devcontainer
johanneskoester Jul 8, 2025
cb7fde9
fix activation
johanneskoester Jul 8, 2025
3049d69
use script
johanneskoester Jul 8, 2025
ebcfcb2
Update .devcontainer/setup.bash
johanneskoester Jul 8, 2025
8f1b13e
Update .devcontainer/setup.bash
johanneskoester Jul 8, 2025
ae2391e
fix
johanneskoester Jul 9, 2025
d6f7fb0
Merge branch 'feat/devcontainer' of github.com:snakemake/snakemake-tu…
johanneskoester Jul 9, 2025
aabac05
fix
johanneskoester Jul 9, 2025
bf5e6d5
fix
johanneskoester Jul 9, 2025
11fd8c8
Update devcontainer.json
johanneskoester Jul 9, 2025
e9928f6
Update setup.bash
johanneskoester Jul 9, 2025
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9 changes: 9 additions & 0 deletions .devcontainer/devcontainer.json
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Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
// For format details, see https://aka.ms/devcontainer.json.
{
"name": "Snakemake-Tutorial",
"build": {
"context": "..",
"dockerfile": "../Dockerfile"
},
"postCreateCommand": "bash setup.bash"
}
6 changes: 6 additions & 0 deletions .devcontainer/setup.bash
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Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
rm -f Dockerfile .gitpod.yml && rm -rf .github
echo -e "# Snakemake-Tutorial\n\nYour gitpod workspace for the snakemake-tutorial has been initialized. Now you can start with the [basic tutorial](https://snakemake.readthedocs.io/en/stable/tutorial/basics.html)." > README.md
echo \"*\" > .gitignore
conda init
source ~/.bashrc
echo 'conda activate snakemake-tutorial' >> ~/.bashrc"