chore(master): release 9.4.1

Author: snakemake-bot

CHANGELOG.md

@@ -1,5 +1,95 @@
 # Changelog
 
+## [9.4.1](https://github.com/snakemake/snakemake-wrappers/compare/v9.4.0...v9.4.1) (2026-03-20)
+
+
+### Performance Improvements
+
+* autobump bio/alignoth/environment.yaml ([#5090](https://github.com/snakemake/snakemake-wrappers/issues/5090)) ([c898493](https://github.com/snakemake/snakemake-wrappers/commit/c898493390eb547d7f919cfe55ee3c49f5158b73))
+* autobump bio/bcftools/call/environment.yaml ([#5097](https://github.com/snakemake/snakemake-wrappers/issues/5097)) ([c948ece](https://github.com/snakemake/snakemake-wrappers/commit/c948ece4bbb9907b43ff038efaa95a859848f310))
+* autobump bio/bcftools/concat/environment.yaml ([#5098](https://github.com/snakemake/snakemake-wrappers/issues/5098)) ([3586af1](https://github.com/snakemake/snakemake-wrappers/commit/3586af105a55ca2c9ccda9e5437fe8d6b3954101))
+* autobump bio/bcftools/filter/environment.yaml ([#5091](https://github.com/snakemake/snakemake-wrappers/issues/5091)) ([46dac75](https://github.com/snakemake/snakemake-wrappers/commit/46dac758a47f2249caab1fde64fce647664cb457))
+* autobump bio/bcftools/index/environment.yaml ([#5127](https://github.com/snakemake/snakemake-wrappers/issues/5127)) ([9a8f17a](https://github.com/snakemake/snakemake-wrappers/commit/9a8f17a93cc9f136c2cf0a1708a5b9cca1e2f480))
+* autobump bio/bcftools/merge/environment.yaml ([#5094](https://github.com/snakemake/snakemake-wrappers/issues/5094)) ([a35a08a](https://github.com/snakemake/snakemake-wrappers/commit/a35a08a1a36bd1124a0ab187ebf464e4a4b22e47))
+* autobump bio/bcftools/mpileup/environment.yaml ([#5092](https://github.com/snakemake/snakemake-wrappers/issues/5092)) ([327b780](https://github.com/snakemake/snakemake-wrappers/commit/327b780a0fb50e8f4cd680176bd44d6adb4f25dc))
+* autobump bio/bcftools/norm/environment.yaml ([#5124](https://github.com/snakemake/snakemake-wrappers/issues/5124)) ([da23986](https://github.com/snakemake/snakemake-wrappers/commit/da239864ffc7575f3d46a3e9453df0308921304e))
+* autobump bio/bcftools/reheader/environment.yaml ([#5104](https://github.com/snakemake/snakemake-wrappers/issues/5104)) ([d62fbb7](https://github.com/snakemake/snakemake-wrappers/commit/d62fbb7012aca69273eeeb5d6099d067fff45da0))
+* autobump bio/bcftools/sort/environment.yaml ([#5108](https://github.com/snakemake/snakemake-wrappers/issues/5108)) ([8fb1da5](https://github.com/snakemake/snakemake-wrappers/commit/8fb1da542e4cc6b59177427f302f3ba56479ae07))
+* autobump bio/bcftools/stats/environment.yaml ([#5123](https://github.com/snakemake/snakemake-wrappers/issues/5123)) ([339ba27](https://github.com/snakemake/snakemake-wrappers/commit/339ba2752e9061f65c843754eb45424499e9df45))
+* autobump bio/bcftools/view/environment.yaml ([#5117](https://github.com/snakemake/snakemake-wrappers/issues/5117)) ([6978b53](https://github.com/snakemake/snakemake-wrappers/commit/6978b539398e3115b4df76bf8444b6bb1f82378e))
+* autobump bio/bedtools/bamtobed/environment.yaml ([#5113](https://github.com/snakemake/snakemake-wrappers/issues/5113)) ([64bb0e3](https://github.com/snakemake/snakemake-wrappers/commit/64bb0e3028f9eca455b242f0e351a4bf4281ef05))
+* autobump bio/bedtools/complement/environment.yaml ([#5125](https://github.com/snakemake/snakemake-wrappers/issues/5125)) ([450ac7a](https://github.com/snakemake/snakemake-wrappers/commit/450ac7ae6f65633e431f27478f23f3f411415595))
+* autobump bio/bedtools/coveragebed/environment.yaml ([#5112](https://github.com/snakemake/snakemake-wrappers/issues/5112)) ([fefdf96](https://github.com/snakemake/snakemake-wrappers/commit/fefdf96d5d5db2c11a0bd616771f38d8a328a532))
+* autobump bio/bedtools/genomecov/environment.yaml ([#5114](https://github.com/snakemake/snakemake-wrappers/issues/5114)) ([08d5d57](https://github.com/snakemake/snakemake-wrappers/commit/08d5d571a9a507bbbea928d392e3e3c239b8a472))
+* autobump bio/bedtools/intersect/environment.yaml ([#5119](https://github.com/snakemake/snakemake-wrappers/issues/5119)) ([0475001](https://github.com/snakemake/snakemake-wrappers/commit/0475001ac826cda122fce10ac6380aaab088aadc))
+* autobump bio/bedtools/merge/environment.yaml ([#5111](https://github.com/snakemake/snakemake-wrappers/issues/5111)) ([9c43ae2](https://github.com/snakemake/snakemake-wrappers/commit/9c43ae2bf32539cb909a096866c3a9ffe5b77f2b))
+* autobump bio/bedtools/slop/environment.yaml ([#5118](https://github.com/snakemake/snakemake-wrappers/issues/5118)) ([b646945](https://github.com/snakemake/snakemake-wrappers/commit/b64694557787a3aad8cd45b699bf26fc92f95f9e))
+* autobump bio/bedtools/sort/environment.yaml ([#5121](https://github.com/snakemake/snakemake-wrappers/issues/5121)) ([41efc19](https://github.com/snakemake/snakemake-wrappers/commit/41efc19bd3c290fbe8c3c90361fbaa9f0869f1b7))
+* autobump bio/bedtools/split/environment.yaml ([#5102](https://github.com/snakemake/snakemake-wrappers/issues/5102)) ([25cd299](https://github.com/snakemake/snakemake-wrappers/commit/25cd2997b3e384db91cab61c4a2d17167096e93c))
+* autobump bio/bellerophon/environment.yaml ([#5106](https://github.com/snakemake/snakemake-wrappers/issues/5106)) ([063fc86](https://github.com/snakemake/snakemake-wrappers/commit/063fc8623cca04b01d226ae5f2e9e1f67c82e83e))
+* autobump bio/benchmark/chm-eval-sample/environment.yaml ([#5109](https://github.com/snakemake/snakemake-wrappers/issues/5109)) ([b52b308](https://github.com/snakemake/snakemake-wrappers/commit/b52b30887fa936b7bae3fd5ae2043a46a6c71459))
+* autobump bio/bgzip/environment.yaml ([#5096](https://github.com/snakemake/snakemake-wrappers/issues/5096)) ([8b73075](https://github.com/snakemake/snakemake-wrappers/commit/8b730754b964f629f997eeb554e3f0d66a21debc))
+* autobump bio/bismark/bam2nuc/environment.yaml ([#5126](https://github.com/snakemake/snakemake-wrappers/issues/5126)) ([5af9c41](https://github.com/snakemake/snakemake-wrappers/commit/5af9c4121d12c7fb4f032ce21cd11fc4909f7d68))
+* autobump bio/bismark/bismark_genome_preparation/environment.yaml ([#5099](https://github.com/snakemake/snakemake-wrappers/issues/5099)) ([86f023e](https://github.com/snakemake/snakemake-wrappers/commit/86f023e9b316a1cd0659a40b630afde5ccdec9c1))
+* autobump bio/bismark/bismark_methylation_extractor/environment.yaml ([#5115](https://github.com/snakemake/snakemake-wrappers/issues/5115)) ([81d7a6a](https://github.com/snakemake/snakemake-wrappers/commit/81d7a6a86dae3859e8f421bb0c076fc0efd1acae))
+* autobump bio/bismark/bismark/environment.yaml ([#5128](https://github.com/snakemake/snakemake-wrappers/issues/5128)) ([1a831ba](https://github.com/snakemake/snakemake-wrappers/commit/1a831baf042f2d64f6f623fee3438efe711d14b0))
+* autobump bio/bismark/bismark2bedGraph/environment.yaml ([#5095](https://github.com/snakemake/snakemake-wrappers/issues/5095)) ([d224152](https://github.com/snakemake/snakemake-wrappers/commit/d224152f60e988e04e91c3873d34af0cec4ef402))
+* autobump bio/bismark/bismark2report/environment.yaml ([#5101](https://github.com/snakemake/snakemake-wrappers/issues/5101)) ([1c70afc](https://github.com/snakemake/snakemake-wrappers/commit/1c70afcf2c5a21dd11f49cff8a2a977397b0a958))
+* autobump bio/bismark/bismark2summary/environment.yaml ([#5107](https://github.com/snakemake/snakemake-wrappers/issues/5107)) ([61804d6](https://github.com/snakemake/snakemake-wrappers/commit/61804d676bfd29873e3969d429e8640e266c329c))
+* autobump bio/bismark/deduplicate_bismark/environment.yaml ([#5105](https://github.com/snakemake/snakemake-wrappers/issues/5105)) ([223775f](https://github.com/snakemake/snakemake-wrappers/commit/223775f576345d4caec505bd73995d07e1a04634))
+* autobump bio/bowtie2/align/environment.yaml ([#5110](https://github.com/snakemake/snakemake-wrappers/issues/5110)) ([783bd88](https://github.com/snakemake/snakemake-wrappers/commit/783bd88fdc79ebde2f9d7b17d128fd8e5b644227))
+* autobump bio/bwa-mem2/mem/environment.yaml ([#5120](https://github.com/snakemake/snakemake-wrappers/issues/5120)) ([787ae6a](https://github.com/snakemake/snakemake-wrappers/commit/787ae6ab41fe75bb4b30b8b65f791b1c5421c44a))
+* autobump bio/bwa/mem/environment.yaml ([#5100](https://github.com/snakemake/snakemake-wrappers/issues/5100)) ([ef5f5e7](https://github.com/snakemake/snakemake-wrappers/commit/ef5f5e7709b628259efa4cb05cb79eef05f831c0))
+* autobump bio/bwa/sampe/environment.yaml ([#5103](https://github.com/snakemake/snakemake-wrappers/issues/5103)) ([c431cf4](https://github.com/snakemake/snakemake-wrappers/commit/c431cf4c86af1ed0d305d23e4fd2f6085310b788))
+* autobump bio/bwa/samse/environment.yaml ([#5116](https://github.com/snakemake/snakemake-wrappers/issues/5116)) ([4e267ad](https://github.com/snakemake/snakemake-wrappers/commit/4e267adc0a7a1b7dc3d492426aa5e5e548544d42))
+* autobump bio/bwa/samxe/environment.yaml ([#5122](https://github.com/snakemake/snakemake-wrappers/issues/5122)) ([6b83924](https://github.com/snakemake/snakemake-wrappers/commit/6b8392462b3b685e9eb6812d57202d610f00fbef))
+* autobump bio/bwameth/memx/environment.yaml ([#5093](https://github.com/snakemake/snakemake-wrappers/issues/5093)) ([66466a1](https://github.com/snakemake/snakemake-wrappers/commit/66466a14508132d7dd3a04b896e316d67529a259))
+* autobump bio/cnvkit/export/environment.yaml ([#5130](https://github.com/snakemake/snakemake-wrappers/issues/5130)) ([b385cd2](https://github.com/snakemake/snakemake-wrappers/commit/b385cd23cd5743ffe36a78842754d7a774ead41e))
+* autobump bio/delly/environment.yaml ([#5132](https://github.com/snakemake/snakemake-wrappers/issues/5132)) ([98dcead](https://github.com/snakemake/snakemake-wrappers/commit/98dceadb9430b823b51941970d606a4aca7a7f51))
+* autobump bio/dragmap/align/environment.yaml ([#5131](https://github.com/snakemake/snakemake-wrappers/issues/5131)) ([68ce26c](https://github.com/snakemake/snakemake-wrappers/commit/68ce26cf7d25ea389cc09628322b85b05fd074da))
+* autobump bio/fastp/environment.yaml ([#5134](https://github.com/snakemake/snakemake-wrappers/issues/5134)) ([40a0fb8](https://github.com/snakemake/snakemake-wrappers/commit/40a0fb806b1925ffa2ac0294a799a5b2d488255e))
+* autobump bio/freebayes/environment.yaml ([#5135](https://github.com/snakemake/snakemake-wrappers/issues/5135)) ([d77af33](https://github.com/snakemake/snakemake-wrappers/commit/d77af336d1fb4c42166afd2ebdbe547c622098d4))
+* autobump bio/gatk/applybqsr/environment.yaml ([#5136](https://github.com/snakemake/snakemake-wrappers/issues/5136)) ([b28bee7](https://github.com/snakemake/snakemake-wrappers/commit/b28bee7f3efadd65e5127401c78e6f4233562f73))
+* autobump bio/hisat2/align/environment.yaml ([#5138](https://github.com/snakemake/snakemake-wrappers/issues/5138)) ([41a5ec7](https://github.com/snakemake/snakemake-wrappers/commit/41a5ec787780c3339d8397662e24cfa2d1512ace))
+* autobump bio/homer/makeTagDirectory/environment.yaml ([#5137](https://github.com/snakemake/snakemake-wrappers/issues/5137)) ([c894dfd](https://github.com/snakemake/snakemake-wrappers/commit/c894dfd2652091068df9511ee2de7ce1085d1125))
+* autobump bio/lofreq/call/environment.yaml ([#5140](https://github.com/snakemake/snakemake-wrappers/issues/5140)) ([a33460c](https://github.com/snakemake/snakemake-wrappers/commit/a33460c63efb9aa71775e717d970e9233bc121ae))
+* autobump bio/lofreq/indelqual/environment.yaml ([#5139](https://github.com/snakemake/snakemake-wrappers/issues/5139)) ([791ce40](https://github.com/snakemake/snakemake-wrappers/commit/791ce403143521563ee2cbdc5bf4542361f7db45))
+* autobump bio/minimap2/aligner/environment.yaml ([#5141](https://github.com/snakemake/snakemake-wrappers/issues/5141)) ([795fddd](https://github.com/snakemake/snakemake-wrappers/commit/795fddd6ffacd0930002e28227a3974c9f478e8e))
+* autobump bio/mofa2/training/environment.yaml ([#5142](https://github.com/snakemake/snakemake-wrappers/issues/5142)) ([6b64bfe](https://github.com/snakemake/snakemake-wrappers/commit/6b64bfeca22de6e85cbd23f75d71c2a0ee491b5a))
+* autobump bio/paladin/align/environment.yaml ([#5146](https://github.com/snakemake/snakemake-wrappers/issues/5146)) ([c226b5d](https://github.com/snakemake/snakemake-wrappers/commit/c226b5d6e244d2fb8dfccf8f6fc20698280f3a41))
+* autobump bio/picard/markduplicates/environment.yaml ([#5147](https://github.com/snakemake/snakemake-wrappers/issues/5147)) ([4403d22](https://github.com/snakemake/snakemake-wrappers/commit/4403d22a7d1d5ed520a52fe94db694f8b84fd807))
+* autobump bio/pretext/map/environment.yaml ([#5145](https://github.com/snakemake/snakemake-wrappers/issues/5145)) ([b8210af](https://github.com/snakemake/snakemake-wrappers/commit/b8210afbbd11f21131d5693741151c73ca3006d7))
+* autobump bio/prinseq-plus-plus/environment.yaml ([#5143](https://github.com/snakemake/snakemake-wrappers/issues/5143)) ([c285c3c](https://github.com/snakemake/snakemake-wrappers/commit/c285c3c0768446c9977d139be0d6749caf98552e))
+* autobump bio/ptrimmer/environment.yaml ([#5144](https://github.com/snakemake/snakemake-wrappers/issues/5144)) ([0a01341](https://github.com/snakemake/snakemake-wrappers/commit/0a01341fadafbb1c93f180a774772bef7b3ae367))
+* autobump bio/reference/ensembl-variation/environment.yaml ([#5148](https://github.com/snakemake/snakemake-wrappers/issues/5148)) ([6c9373c](https://github.com/snakemake/snakemake-wrappers/commit/6c9373c4e1bd2ba884bb7f292aa3056d034853d0))
+* autobump bio/salmon/index/environment.yaml ([#5078](https://github.com/snakemake/snakemake-wrappers/issues/5078)) ([16b5adb](https://github.com/snakemake/snakemake-wrappers/commit/16b5adb4f2a5d4a4412d7ebcb03fdbd18adc4b9c))
+* autobump bio/samtools/calmd/environment.yaml ([#5154](https://github.com/snakemake/snakemake-wrappers/issues/5154)) ([9627e71](https://github.com/snakemake/snakemake-wrappers/commit/9627e71cb6a16cade205dbfac43229af292c8741))
+* autobump bio/samtools/collate/environment.yaml ([#5166](https://github.com/snakemake/snakemake-wrappers/issues/5166)) ([8f0ab45](https://github.com/snakemake/snakemake-wrappers/commit/8f0ab45022c127218c18e75d1db044379f548a97))
+* autobump bio/samtools/depth/environment.yaml ([#5167](https://github.com/snakemake/snakemake-wrappers/issues/5167)) ([b9558be](https://github.com/snakemake/snakemake-wrappers/commit/b9558bef00e86d57fd99769433b6d1e79425afc5))
+* autobump bio/samtools/faidx/environment.yaml ([#5163](https://github.com/snakemake/snakemake-wrappers/issues/5163)) ([dc88967](https://github.com/snakemake/snakemake-wrappers/commit/dc889672373b473e26096318a2231ed3945be3e1))
+* autobump bio/samtools/fastx/environment.yaml ([#5157](https://github.com/snakemake/snakemake-wrappers/issues/5157)) ([db3604b](https://github.com/snakemake/snakemake-wrappers/commit/db3604b0ab377581c2812c7a6731dc1d42ea0c88))
+* autobump bio/samtools/fixmate/environment.yaml ([#5155](https://github.com/snakemake/snakemake-wrappers/issues/5155)) ([45192e9](https://github.com/snakemake/snakemake-wrappers/commit/45192e933c369c15f1967ae25f966ecbccb52b27))
+* autobump bio/samtools/flagstat/environment.yaml ([#5156](https://github.com/snakemake/snakemake-wrappers/issues/5156)) ([b5d508a](https://github.com/snakemake/snakemake-wrappers/commit/b5d508a97f7a4e6bf6900c9798807f23ddc3c550))
+* autobump bio/samtools/idxstats/environment.yaml ([#5151](https://github.com/snakemake/snakemake-wrappers/issues/5151)) ([e4b187f](https://github.com/snakemake/snakemake-wrappers/commit/e4b187f5000d9d94abbf2588ae7971e5d2571241))
+* autobump bio/samtools/index/environment.yaml ([#5149](https://github.com/snakemake/snakemake-wrappers/issues/5149)) ([2bfd2c1](https://github.com/snakemake/snakemake-wrappers/commit/2bfd2c1db76df821865b41ac0494d550009f7629))
+* autobump bio/samtools/markdup/environment.yaml ([#5152](https://github.com/snakemake/snakemake-wrappers/issues/5152)) ([70aa29d](https://github.com/snakemake/snakemake-wrappers/commit/70aa29db816ea0842497c96b7155711e699e210f))
+* autobump bio/samtools/merge/environment.yaml ([#5169](https://github.com/snakemake/snakemake-wrappers/issues/5169)) ([fd81fa1](https://github.com/snakemake/snakemake-wrappers/commit/fd81fa1aa8a6f5c46e9b8a4355d2b54d890755f1))
+* autobump bio/samtools/mpileup/environment.yaml ([#5168](https://github.com/snakemake/snakemake-wrappers/issues/5168)) ([495b456](https://github.com/snakemake/snakemake-wrappers/commit/495b4562e9cfdf91521a01631d11aa55975f3d7d))
+* autobump bio/samtools/sort/environment.yaml ([#5150](https://github.com/snakemake/snakemake-wrappers/issues/5150)) ([1398d76](https://github.com/snakemake/snakemake-wrappers/commit/1398d767b67e00fe762629761b9ac7bda7f45c5d))
+* autobump bio/samtools/stats/environment.yaml ([#5162](https://github.com/snakemake/snakemake-wrappers/issues/5162)) ([60ec3c4](https://github.com/snakemake/snakemake-wrappers/commit/60ec3c4ca87738904639cf54083e056b66d30e9d))
+* autobump bio/samtools/view/environment.yaml ([#5153](https://github.com/snakemake/snakemake-wrappers/issues/5153)) ([396296a](https://github.com/snakemake/snakemake-wrappers/commit/396296aec15b516a92613184e6f4a4f84c7bda8c))
+* autobump bio/seqkit/environment.yaml ([#5160](https://github.com/snakemake/snakemake-wrappers/issues/5160)) ([4f5a096](https://github.com/snakemake/snakemake-wrappers/commit/4f5a09610c13711c4ad90e45afe884b445628017))
+* autobump bio/snpeff/annotate/environment.yaml ([#5164](https://github.com/snakemake/snakemake-wrappers/issues/5164)) ([1ab18af](https://github.com/snakemake/snakemake-wrappers/commit/1ab18af8b66de23df6eaa14e7b30ef49807e9690))
+* autobump bio/snpeff/download/environment.yaml ([#5158](https://github.com/snakemake/snakemake-wrappers/issues/5158)) ([b347081](https://github.com/snakemake/snakemake-wrappers/commit/b347081eb15adcd1caf3e2fc4ddbbd954089e027))
+* autobump bio/snpsift/annotate/environment.yaml ([#5170](https://github.com/snakemake/snakemake-wrappers/issues/5170)) ([b624cae](https://github.com/snakemake/snakemake-wrappers/commit/b624cae1dcf816ee8ee768fcc1345f89754afded))
+* autobump bio/snpsift/dbnsfp/environment.yaml ([#5161](https://github.com/snakemake/snakemake-wrappers/issues/5161)) ([6b1ce9d](https://github.com/snakemake/snakemake-wrappers/commit/6b1ce9df696f50a8c05c5e0d0b111cbf1d1afb55))
+* autobump bio/snpsift/genesets/environment.yaml ([#5159](https://github.com/snakemake/snakemake-wrappers/issues/5159)) ([0170111](https://github.com/snakemake/snakemake-wrappers/commit/0170111919c5c88724173f35635498728becd983))
+* autobump bio/snpsift/gwascat/environment.yaml ([#5165](https://github.com/snakemake/snakemake-wrappers/issues/5165)) ([2a1b308](https://github.com/snakemake/snakemake-wrappers/commit/2a1b308ed05dd362b54485dd8003b1681a39f418))
+* autobump bio/tabix/index/environment.yaml ([#5172](https://github.com/snakemake/snakemake-wrappers/issues/5172)) ([3e83a4d](https://github.com/snakemake/snakemake-wrappers/commit/3e83a4d6ccb9e39536144587a0c30286772dd5e7))
+* autobump bio/tabix/query/environment.yaml ([#5171](https://github.com/snakemake/snakemake-wrappers/issues/5171)) ([4f3610d](https://github.com/snakemake/snakemake-wrappers/commit/4f3610df12b6638f5fbb62de412121250900c7b0))
+* autobump utils/cairosvg/environment.yaml ([#5129](https://github.com/snakemake/snakemake-wrappers/issues/5129)) ([8c664ea](https://github.com/snakemake/snakemake-wrappers/commit/8c664eae48d8e70e7c57bc2ad854c1fd8c812ab1))
+* autobump utils/datavzrd/environment.yaml ([#5133](https://github.com/snakemake/snakemake-wrappers/issues/5133)) ([c7b3937](https://github.com/snakemake/snakemake-wrappers/commit/c7b393724874fc91bc110cdb77080085dc5e10e3))
+
 ## [9.4.0](https://github.com/snakemake/snakemake-wrappers/compare/v9.3.0...v9.4.0) (2026-03-17)