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Pull requests: snakemake/snakemake-wrappers

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Pull requests list

feat: add swarm wrapper
#5218 opened Apr 8, 2026 by fgvieira Collaborator Loading…
7 tasks done
1
perf: autobump bio/transdecoder/longorfs/environment.yaml bio/transdecoder/longorfs
#5215 opened Apr 3, 2026 by snakedeploy-bot bot Loading…
1
perf: autobump bio/transdecoder/predict/environment.yaml bio/transdecoder/predict
#5214 opened Apr 3, 2026 by snakedeploy-bot bot Loading…
1
perf: autobump bio/sra-tools/fasterq-dump/environment.yaml bio/sra-tools/fasterq-dump
#5213 opened Apr 3, 2026 by snakedeploy-bot bot Loading…
perf: autobump bio/refgenie/environment.yaml bio/refgenie
#5187 opened Mar 27, 2026 by snakedeploy-bot bot Loading…
feat: bcftools fixploidy wrapper
#5176 opened Mar 23, 2026 by tdayris Contributor Loading…
7 tasks done
16
feat: add kraken2 wrappers (classify, build, add-to-library)
#5086 opened Mar 16, 2026 by warrok97ao Loading…
7 tasks done
62
perf: autobump bio/gatk/applybqsrspark/environment.yaml bio/gatk/applybqsrspark
#4977 opened Feb 20, 2026 by snakedeploy-bot bot Loading…
feat: Add wrappers in bio/reference for Ensembl Genomes
#4882 opened Dec 23, 2025 by kbseah Loading…
7 tasks done
30
feat: add pytrf sub-commands as individual Snakemake-Wrappers
#4745 opened Nov 27, 2025 by rohan-ibn-tariq Contributor Loading…
7 tasks done
@fgvieira
81
feat: announcement robot message and image
#4712 opened Nov 7, 2025 by cmeesters Member Loading…
3
perf: autobump bio/pyfastaq/replace_bases/environment.yaml bio/pyfastaq/replace_bases
#4707 opened Nov 7, 2025 by snakedeploy-bot bot Loading…
2
perf: autobump bio/ngscheckmate/ncm/environment.yaml bio/ngscheckmate/ncm
#4705 opened Nov 7, 2025 by snakedeploy-bot bot Loading…
1
feat: Salmon-tximport meta-wrapper pathvars update
#4665 opened Oct 20, 2025 by tdayris Contributor Loading…
6 of 7 tasks
7
feat: allow setting launchDir in params
#4638 opened Oct 9, 2025 by tedil Contributor Loading…
14
fix: Support both reference.dict and reference.fasta.dict in GRIDSS wrappers Stale
#4426 opened Aug 19, 2025 by RitzelC Loading…
16
feat: bowtie2 can now sort with samtools and picard Stale
#3518 opened Dec 3, 2024 by jlanga Contributor Loading…
7 tasks done
43
feat: added wrapper for Paraphase Stale
#3071 opened Jul 15, 2024 by MagdalenaZZ Loading…
1 task done
@fgvieira
75
feat: Add a wrapper for quarto markdown rendering Stale
#3003 opened Jun 20, 2024 by votti Contributor Loading…
1 task done
33
feat: ensembl reference collections Stale
#2977 opened Jun 3, 2024 by mauripops Loading…
1 task done
15
feat: Add configurable protocol support to ensembl reference download Stale
#2649 opened Feb 15, 2024 by pettyalex Loading…
1 task done
13
feat: add wrapper for metaDMG Stale
#1809 opened Sep 19, 2023 by fgvieira Collaborator • Draft
1 task done
1
feat: add ngsngs wrapper Stale
#1808 opened Sep 19, 2023 by fgvieira Collaborator • Draft
1 task done
1
feat: new inphared-db wrapper Stale
#1550 opened Jul 20, 2023 by nacnoriko Loading…
1 task
19
feat: add wrapper for rbt vcf_fix_iupac_alleles
#1209 opened Apr 5, 2023 by fgvieira Collaborator Loading…
1 task done
11
ProTip! What’s not been updated in a month: updated:<2026-03-09.