Skip to content

Pull requests: snakemake/snakemake-wrappers

New pull request New
48 Open 5,607 Closed
48 Open 5,607 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

chore(master): release 9.16.1 autorelease: pending
#5817 opened Aug 14, 2026 by snakemake-bot Contributor Loading…
1
perf: autobump wrappers in meta/bio/salmon_tximport/meta_wrapper.smk meta/bio/salmon_tximport
#5747 opened Aug 7, 2026 by snakedeploy-bot Bot Loading…
perf: autobump wrappers in meta/bio/gatk_mutect2_calling/meta_wrapper.smk meta/bio/gatk_mutect2_calling
#5746 opened Aug 7, 2026 by snakedeploy-bot Bot Loading…
perf: autobump wrappers in meta/bio/calc_consensus_reads/meta_wrapper.smk meta/bio/calc_consensus_reads
#5745 opened Aug 7, 2026 by snakedeploy-bot Bot Loading…
perf: autobump wrappers in meta/bio/bwa_mapping/meta_wrapper.smk meta/bio/bwa_mapping
#5744 opened Aug 7, 2026 by snakedeploy-bot Bot Loading…
perf: autobump wrappers in meta/bio/bowtie2_sambamba/meta_wrapper.smk meta/bio/bowtie2_sambamba
#5743 opened Aug 7, 2026 by snakedeploy-bot Bot Loading…
fix: fix mem spec in samtools/sort wrapper
#5732 opened Jul 30, 2026 by johanneskoester Contributor Loading…
7 tasks done
1
perf: autobump bio/gatk/markduplicatesspark/environment.yaml bio/gatk/markduplicatesspark
#5646 opened Jul 24, 2026 by snakedeploy-bot Bot Loading…
perf: autobump bio/gatk/printreadsspark/environment.yaml bio/gatk/printreadsspark
#5640 opened Jul 24, 2026 by snakedeploy-bot Bot Loading…
1
perf: autobump bio/gatk/baserecalibratorspark/environment.yaml bio/gatk/baserecalibratorspark
#5630 opened Jul 24, 2026 by snakedeploy-bot Bot Loading…
perf: autobump wrappers in meta/bio/star_arriba/meta_wrapper.smk meta/bio/star_arriba
#5591 opened Jul 24, 2026 by snakedeploy-bot Bot Loading…
perf: autobump wrappers in meta/bio/dada2_se/meta_wrapper.smk meta/bio/dada2_se
#5588 opened Jul 24, 2026 by snakedeploy-bot Bot Loading…
perf: autobump wrappers in meta/bio/dada2_pe/meta_wrapper.smk meta/bio/dada2_pe
#5587 opened Jul 24, 2026 by snakedeploy-bot Bot Loading…
perf: autobump wrappers in meta/bio/alignoth_report/meta_wrapper.smk meta/bio/alignoth_report
#5583 opened Jul 24, 2026 by snakedeploy-bot Bot Loading…
feat: add rbt fastq-split
#5580 opened Jul 17, 2026 by tdayris Contributor Loading…
7 tasks done
5
feat: minibwa map
#5546 opened Jul 16, 2026 by tdayris Contributor Loading…
7 tasks done
12
feat: minibwa index
#5545 opened Jul 16, 2026 by tdayris Contributor Loading…
7 tasks done
5
fix: Dropped index.tct/index.tdct from examples
#5544 opened Jul 15, 2026 by niekwit Contributor Loading…
1
2
perf: autobump wrappers in meta/bio/varscan2_snpeff/meta_wrapper.smk meta/bio/varscan2_snpeff
#5366 opened Jun 19, 2026 by snakedeploy-bot Bot Loading…
feat!: Update and refactor wrapper
#5353 opened Jun 17, 2026 by fgvieira Collaborator • Draft
7 tasks done
1
docs: document wrapper interface conventions
#5310 opened May 26, 2026 by ehsanestaji Contributor Loading…
1
4
fix!: Switch token to an input file
#5302 opened May 21, 2026 by fgvieira Collaborator Loading…
7 tasks done
7
perf: autobump utils/nextflow/environment.yaml utils/nextflow
#5275 opened May 1, 2026 by snakedeploy-bot Bot Loading…
feat: add flye wrapper
#5265 opened Apr 24, 2026 by arog-bioinfo Contributor Loading…
7 tasks done
14
fix!: make star index output and star align input idx a multiext()
#5226 opened Apr 14, 2026 by dlaehnemann Member Loading…
7 tasks done
7
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.