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1. HyLoRD HyLoRD Public

   A Hybrid Approach for Cell Type Deconvolution in Long-Read (ONT) Methylation Data

   C++

2. SQUIRE SQUIRE Public

   Statistical Quality Utility for Ideal Reference matrix Enhancement (for use with HyLoRD)

   Python

3. ChromOptimise ChromOptimise Public

   Find the optimum number of states to use in a ChromHMM model

   R 2

4. ChromBinarize ChromBinarize Public

   Scripts to convert ONT, BS and peak called data to ChromHMM binary format

   R 1

5. ChromCompare ChromCompare Public

   Find similar states between ChromHMM models

   R 1