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Pull requests: sourmash-bio/sourmash

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Pull requests list

Build(ci): Bump prefix-dev/setup-pixi from 0.10.0 to 0.10.1 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#3978 opened Aug 10, 2026 by dependabot Bot Loading…
1
Build(ci): Bump pypa/cibuildwheel from 4.1.1 to 4.2.0 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#3977 opened Aug 10, 2026 by dependabot Bot Loading…
1
[pre-commit.ci] pre-commit autoupdate
#3976 opened Aug 3, 2026 by pre-commit-ci Bot Loading…
1
Build(deps-rs): Bump the dependencies group across 1 directory with 5 updates dependencies Pull requests that update a dependency file rust
#3975 opened Aug 3, 2026 by dependabot Bot Loading…
1
Build(ci): Bump CodSpeedHQ/action from 4 to 5.0.1 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#3974 opened Aug 3, 2026 by dependabot Bot Loading…
3
fix: error out when --singleton is combined with --merge/--name
#3965 opened Jul 14, 2026 by MakanFar Loading…
1
Add abundance-weighted Bray-Curtis to sourmash compare
#3941 opened May 22, 2026 by nico142857 Loading…
1
Update HPTABLE with correct Gly and Cys mappings
#3932 opened Apr 21, 2026 by olgabot Collaborator Loading…
2
test: add CLI test for lca summarize --query-from-file
#3924 opened Apr 8, 2026 by haoyu-haoyu Contributor Loading…
1
Added a build step for building wasm using wasm-pack
#3916 opened Apr 4, 2026 by MGS-sails Collaborator Loading…
3
WIP: add code to get matches w/o full signatures
#3863 opened Nov 26, 2025 by ctb Contributor Loading…
1
[MRG] Adding picklist arg to sourmash_args.load_picklist to allow the option
#3839 opened Oct 23, 2025 by ccbaumler Contributor Loading…
1
2
[MRG] Lineage methods to allow easier pangenomic ranktable generation
#3837 opened Oct 22, 2025 by ccbaumler Contributor Loading…
3
MRG: add picklist to sig collect
#3805 opened Sep 4, 2025 by bluegenes Contributor Loading…
4
WIP: add exception for unkown manifest output format
#3804 opened Sep 4, 2025 by ctb Contributor Loading…
1
Implement a WortStorage backend
#3789 opened Aug 20, 2025 by luizirber Member • Draft
1
EXP: add bp_weighted_at_rank to tax output
#3716 opened Jun 29, 2025 by ctb Contributor Loading…
1
EXP: upgrade selection and other things in Rust
#3658 opened May 23, 2025 by ctb Contributor Loading…
1
CI: test debian package build
#3525 opened Feb 9, 2025 by luizirber Member • Draft
1
[EXP] use roaring bitmaps for MinHash
#3444 opened Dec 19, 2024 by luizirber Member • Draft
2
EXP: avoid cloning in gather, use iterators directly
#3394 opened Nov 12, 2024 by luizirber Member Loading…
1
EXP: Implement into_iter() on Collection
#3372 opened Nov 4, 2024 by ctb Contributor Loading…
remove match_
#3351 opened Oct 14, 2024 by luizirber Member • Draft
3
EXP: Added derives for mem-dbg
#3292 opened Aug 15, 2024 by LucaCappelletti94 Contributor Loading…
9
CI: enable codspeed for Python
#3262 opened Jul 25, 2024 by luizirber Member • Draft
2
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