recount3

Explore and download data from the recount3 project

R interface to megadepth: BigWig and BAM related utilities

CSHL Statistical Analysis of Genome Scale Data 2023

CSHL Statistical Analysis of Genome Scale Data 2024

Documentation for all things related to `recount3`

Introductory RNA-seq course for LCG-UNAM Feb 2024 (in Spanish)

Shiny app to browse, analyze, and export recount3 RNA-seq studies: 18,998 datasets, quality checks, and PCA.

A database of introns and alternative splicing events across human tissues

Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".

Introductory RNA-seq course for LCG-UNAM Feb 2021 (in Spanish)

Introductory RNA-seq course for LCG-UNAM Jan 2025 (in Spanish)

Reproducible bulk RNA-seq re-analysis (recount3, edgeR) of ASD vs control iPSC-derived neural progenitors from Mariani et al. 2015 — recovers the FOXG1/GABAergic signal, with a donor-aware limma-voom control for repeated measures.

About Introductory RNA-seq course for LCG-UNAM Feb 2026 (in Spanish)

ETL (Extract, Transform, Load) pipeline for processing Recount3 data into Polars DataFrames.

Este es el material del mini curso "Exploración interactiva de datos: plotly y iSEE" ofrecido por la Red Mexicana de Bioinformática y la Comunidad de Desarrolladores de Software en Bioinformática.

Introductory RNA-seq course for LCG-UNAM Feb 2022 (in Spanish)

Introductory RNA-seq course for LCG-UNAM Feb 2023 (in Spanish)