Synthetic biology (SynBio) is a multidisciplinary area of research that seeks to create new biological parts, devices, and systems, or to redesign systems that are already found in nature.
Genetic circuit design automation
A Go package for engineering organisms.
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
✏️ A versatile DNA sequence optimizer
CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression
Open source biolab
BGC Detection and Classification Using Deep Learning
A modern, end-to-end genetic circuit design desktop app
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
Computational synthetic biology: Predicting DNA edits for bioengineering
The resources I always recommend to new synthetic biologists.
Web application enabling users and software to browse, upload, and share synthetic biology designs
Cello v2 is the continuation of the Cello genetic circuit design software.
⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Reinforcement Learning based bioretrosynthesis tool
🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
💠 Find common blocks and differences between DNA sequences
An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive workspace.