Skip to content
#

tonsil-atlas

Star

Here is 1 public repository matching this topic...

dgrfs / HCATonsil_to_h5ad

Star 0

Pipeline to download the HCA Human Tonsil Atlas, extract raw counts and cell-type annotations from the HCATonsilData Bioconductor package, and export a compressed .h5ad file ready for python sc-verse analysis such as scVI model training. Reproducible environment managed with Pixi (R + Python).

python bioinformatics r bioconductor pixi scrna-seq single-cell hca seurat scanpy anndata h5ad scvi tonsil-atlas zellkonverter
  • Updated May 16, 2026
  • R

Improve this page

Add a description, image, and links to the tonsil-atlas topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the tonsil-atlas topic, visit your repo's landing page and select "manage topics."

Learn more