VarFish: comprehensive DNA variant analysis for diagnostics and research

VEP-like tool for sequence ontology and HGVS annotation of VCF files

A port of biocommons/hgvs to the Rust programming language

Genome annotation based on Rust and RocksDB

(Legacy) Annotate variants for import into VarFish server.

A port of biocommons/seqrepo to the Rust programming language

Download public databases for VarFish

Setup VarFish as using Docker Compose

VarFish REST API client (CLI + Python package)

Rust-based background worker for varfish-server

Simple REST API wrapper for CADD-scripts

DEPRECATED, use https://github.com/bihealth/varfish-docker-compose instead

DEPRECATED Convert annotation database files to Var:fish: import format

VarFish (Snakemake) Client Workflow for Querying Snakemake

Clinvar data builds for annonars

VarFish (Snakemake) Client Workflow for Validation

Repository for building IGSR data sets for use in VarFish

Versatile Interface for Genetics Utilization of Nice Ontologies

Experimental VarFish CLI based on aws-smithy

Utilities for using RocksDB as read-only lookup table (after initial bulk import)