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Pull requests: tskit-dev/tskit

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Pull requests list

C and Python API for two-way two-locus stats
#3243 opened Jul 25, 2025 by lkirk Loading…
12
Fix genetic_relatedness to allow single sample set with self-comparisons
#3235 opened Jun 26, 2025 by andrewkern Loading…
2 tasks done
1
2
Initial numba module
#3225 opened Jun 18, 2025 by benjeffery • Draft
17
Check mutation parents on tree sequence init
#3212 opened Jun 10, 2025 by benjeffery Loading…
38
Prevent iterating over a TopologyCounter
#3202 opened Jun 9, 2025 by benjeffery Loading…
1
6
Draft governance model
#3188 opened Jun 5, 2025 by benjeffery • Draft
23
Create a new merge() function, and use that for concatenate
#3183 opened May 29, 2025 by hyanwong • Draft
3 tasks done
1
25
Clarify mutation order in Site() object
#3067 opened Dec 5, 2024 by hyanwong Loading…
5
Unifying stat method desc and linking to math summary
#3005 opened Sep 28, 2024 by gregorgorjanc Loading… Python 0.6.5
5
time windows in statistics
#2948 opened May 9, 2024 by petrelharp • Draft Python 0.6.5
72
Implement efficient seeking from non-null trees using tree_pos
#2911 opened Feb 26, 2024 by duncanMR • Draft
3 tasks
Python 0.6.5
5
Support all-nodes matching in LSHMM
#2861 opened Oct 12, 2023 by jeromekelleher • Draft
1
Add tests for genotype imputation
#2815 opened Aug 7, 2023 by szhan Loading…
3 of 6 tasks
Python 0.6.5
1
@szhan
28
Add docs discussing how to get a matrix of pairwise comparisons
#2776 opened Jul 5, 2023 by hyanwong Loading… Python 0.6.5
4
Generic iterator class for trees and variants
#2762 opened Jun 13, 2023 by hyanwong • Draft
2 of 3 tasks
Python 0.6.5
1
1
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