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Update tool_conf.xml.j2 try to reorganize ecology tools and add geome… #1068

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Update tool_conf.xml.j2 try to reorganize ecology tools and add geome… #1068

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Update tool_conf.xml.j2 try to reorganize ecology tools and add geome…
yvanlebras Dec 25, 2023
bd7f21b
Update templates/galaxy/config/tool_conf.xml.j2
yvanlebras Dec 25, 2023
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21 changes: 12 additions & 9 deletions templates/galaxy/config/tool_conf.xml.j2
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Original file line number Diff line number Diff line change
Expand Up @@ -525,13 +525,7 @@
<tool file="/opt/galaxy/custom-tools/test/imaging/coordinates_of_roi/coordinates_of_roi.xml" />
<tool file="/opt/galaxy/custom-tools/test/imaging/projective_transformation_points/projective_transformation_points.xml" /-->
</section>

<section id="gis_data_handling" name="GIS Data Handling" />
<section id="animal_detection_on_acoustic_recordings" name="Animal Detection on Acoustic Recordings" />
<section id="compute_indicators_for_satellite_remote_sensing" name="Compute indicators for satellite remote sensing" />

<section id="regional_variation" name="Regional Variation" >
</section>
<section id="genome_diversity" name="Genome Diversity" >
</section>

Expand All @@ -551,9 +545,6 @@
<section id="climate_analysis" name="Climate Analysis" />
<section id="apollo" name="Apollo" />
<section id="imaging" name="Imaging" />
<section id="species_abundance" name="Species abundance" />
<section id="compute_indicators_for_turnover_boulders_fields" name="Compute indicators for turnover boulders fields" />
<section id="ecoregionalization" name="Ecoregionalization" />
<section id="astronomy" name="Astronomy" />
<section id="interactivetools" name="Interactive tools">
<tool file="interactive/interactivetool_source.xml" />
Expand Down Expand Up @@ -643,4 +634,16 @@
<tool file="interactive/interactivetool_mgnify_notebook.xml" />
<tool file="interactive/interactivetool_mgnify_notebook_1.2.2.xml" />
</section>

<!-- Ecology subdomain -->
<label id="ecology-data-management" text="Ecology Data Management" />
<section id="gis_data_handling" name="GIS Data Handling" />
<label id="ecology-indicators" text="Biodiversity indicators" />
<section id="compute_indicators_for_turnover_boulders_fields" name="Compute indicators for turnover boulders fields" />
<section id="ecoregionalization" name="Ecoregionalization" />
<section id="geom_mean" name="Indicators from geometric mean" />
<section id="animal_detection_on_acoustic_recordings" name="Animal Detection on Acoustic Recordings" />
<section id="compute_indicators_for_satellite_remote_sensing" name="Compute indicators for satellite remote sensing" />
<section id="regional_variation" name="Regional Variation" />
<section id="species_abundance" name="Species abundance" />
</toolbox>