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New option -cyclize for prediction of cyclic peptides not working

Status: Open.

#42 In uw-ipd/RoseTTAFold2;

· ajian-he opened on Nov 3, 2025

numpy errors now on new install

Status: Open.

#41 In uw-ipd/RoseTTAFold2;

· colles2 opened on May 9, 2025

RuntimeError: CUDA error: uncorrectable ECC error encountered

Status: Open.

#40 In uw-ipd/RoseTTAFold2;

· seongguheo opened on Dec 31, 2024

ERROR: failed to load model

Status: Open.

#37 In uw-ipd/RoseTTAFold2;

· zbekkhozhin opened on May 21, 2024

Non-standard aa residues identified from RF2 prediction

Status: Open.

#34 In uw-ipd/RoseTTAFold2;

· Hossen-sahadot97 opened on Apr 7, 2024

CUDA error out of memory

Status: Open.

#29 In uw-ipd/RoseTTAFold2;

· lloydtripp opened on Feb 19, 2024

Is there a redundant addition of positional encoding in the IterBlock section?

Status: Open.

#28 In uw-ipd/RoseTTAFold2;

· ackbar03 opened on Jan 28, 2024

download bfd

Status: Open.

#26 In uw-ipd/RoseTTAFold2;

· biopig opened on Dec 21, 2023

Packaged RF2-linux.yml pins pytorch-cuda=11.7, may lead to issues with CUDA version

Status: Open.

#25 In uw-ipd/RoseTTAFold2;

· matspunt opened on Nov 14, 2023

DGLError

Status: Open.

#24 In uw-ipd/RoseTTAFold2;

· avilella opened on Nov 10, 2023

competition multimer analysis -- does chain order matter?

Status: Open.

#22 In uw-ipd/RoseTTAFold2;

· avilella opened on Oct 12, 2023

RuntimeError: Sizes of tensors must match except in dimension 0

Status: Open.

#21 In uw-ipd/RoseTTAFold2;

· wonyoungtae opened on Sep 20, 2023