Releases: vari-bbc/rnaseq_workflow
Releases · vari-bbc/rnaseq_workflow
v2.0.0-beta
What's Changed
- Add GATK variant calling again by @genomics-kl in #24
- extracting gene info from gtf file - fix issue 32 by @zhen-fu in #34
- add quick_ref option for workflow by @zhen-fu in #37
- fix the file path of ref_base_dir by @zhen-fu in #39
- Migrate to Snakemake 8 by @dfbautista in #35
- group_chroms.R can handle quick_ref in config by @kew24 in #41
- integrate DESeq2 steps into pipeline by @kew24 in #29
- Add rule to make R project for downstream analyses by @genomics-kl in #30
- Render site by @genomics-kl in #46
- DESeq2 updates by @kew24 in #45
- In-line GSEA for RNASeq Pipeline by @RFillinger in #43
- simple index page by @zhen-fu in #47
- add method summary by @zhen-fu in #48
- Isee by @genomics-kl in #50
- deseq styling by @kew24 in #49
- added trim galore and clusterProfiler refs by @zhen-fu in #52
New Contributors
- @zhen-fu made their first contribution in #34
- @dfbautista made their first contribution in #35
- @kew24 made their first contribution in #41
- @RFillinger made their first contribution in #43
Full Changelog: v1.0.0...v2.0.0-beta
Contributors
RFillinger, zhen-fu, and 3 other contributors