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vivekruhela/README.md

👋 Hi, I'm Vivek Ruhela!

🚀 Postdoctoral Research Scientist | AI in Genomics | Computational Biologist
🔬 Passionate about unraveling genetic mysteries using AI, deep learning (DL), and bioinformatics to advance research in Alzheimer’s, cancer, and neurological disorders.

🔍 About Me

  • 🧬 Expertise: AI-driven genomics, RNA-Seq, DNA analysis, GWAS, eQTL mapping, and precision medicine.
  • 🤖 Tech Stack: Python, R, TensorFlow, PyTorch, Scikit-learn, GWAS Analysis (GEMMA, GCTA, PLINK), eQTL Analysis (TensorQTL, MatrixQTL), Fine-mapping.
  • 🔬 Research Focus: Identifying genetic biomarkers using DL/ML for early diagnosis and targeted treatments.
  • 📚 Publications: Google Scholar | ResearchGate
  • My Academic Website

📌 Featured Projects

🔹 AI-driven RNA-Seq Analysis – Deep learning for biomarker identification, early-onset, targeted therapy.
🔹 Genetic Risk Prediction – ML models for Cancer (Multiple Myeloma), Alzheimer’s risk estimation.
🔹 eQTL Mapping – Identifying regulatory variants in cancer and neurological diseases.

💡 Let's Connect!

📧 Email: vr2592@cumc.columbia.edu
🔗 LinkedIn: linkedin.com/in/vivekruhela
📁 GitHub: github.com/vivekruhela

⭐ Follow my work and let’s innovate together! 🚀

Popular repositories Loading

  1. miRPipe miRPipe Public

    miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs

    Python 5 2

  2. qskeleton qskeleton Public

    Polyhedral computation software for solving facet and vertex enumeration problems for convex polyhedra and performing Fourier-Motzkin elimination

    C++ 2 2

  3. miRSim miRSim Public

    miRSim Synthetic Sequence Simulator

    Jupyter Notebook 2 2

  4. fishplot fishplot Public

    Forked from chrisamiller/fishplot

    Create timecourse "fish plots" that show changes in the clonal architecture of tumors

    R 1

  5. tellurium tellurium Public

    Forked from sys-bio/tellurium

    Python Environment for Modeling and Simulating Biological Systems

    Python 1

  6. BDL-SP-Bio-inspired-DL-architecture-for-Identification-of-altered-Signaling-Pathways-in-MM BDL-SP-Bio-inspired-DL-architecture-for-Identification-of-altered-Signaling-Pathways-in-MM Public

    Bio-inspired DL model for identification of significantly altered pathways

    Jupyter Notebook 1 2