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context script: add meth_pct_diff column Release simulation #99: Commit f9a0c56 pushed by imsuneth
15m 51s dev
dev
15m 51s
context script: simplify var and bg comparison Release simulation #98: Commit 4e80f9e pushed by imsuneth
5m 55s dev
dev
5m 55s
context scritp: consider bg_right from end of variant Release simulation #97: Commit 4da7e6c pushed by imsuneth
48m 1s dev
dev
48m 1s
minor change in context script Release simulation #96: Commit fa4ba52 pushed by imsuneth
38m 18s dev
dev
38m 18s
update varfreq_context script Release simulation #95: Commit 3e57226 pushed by imsuneth
48m 10s dev
dev
48m 10s
check either left or right bg is methylated Release simulation #94: Commit b6e3dec pushed by imsuneth
48m 5s dev
dev
48m 5s
update varfreq summary script Release simulation #93: Commit 4dd2971 pushed by imsuneth
34m 56s dev
dev
34m 56s
fix varfreq summary Release simulation #92: Commit e799511 pushed by imsuneth
4m 49s dev
dev
4m 49s
add ignored counts to context summary Release simulation #91: Commit 215ffc5 pushed by imsuneth
5m 5s dev
dev
5m 5s
update context script Release simulation #90: Commit 459870d pushed by imsuneth
5m 3s dev
dev
5m 3s
add seperate regions thresolds Release simulation #89: Commit dbcf243 pushed by imsuneth
35m 34s dev
dev
35m 34s
test scripts support compressed inputs Release simulation #88: Commit 77802c7 pushed by imsuneth
26m 3s dev
dev
26m 3s
varfreq summary and context test scripts with required test files Release simulation #87: Commit 30b44a3 pushed by imsuneth
50m 46s dev
dev
50m 46s
keep Node 20 on old Ubuntu containers Release simulation #86: Commit d90ea34 pushed by imsuneth
48m 37s dev
dev
48m 37s
fix varmod: tag CpG entries with strand Release simulation #85: Commit 2178567 pushed by imsuneth
41m 54s dev
dev
41m 54s
count and warn imprecise variant Release simulation #84: Commit 4c693f2 pushed by imsuneth
42m 17s dev
dev
42m 17s
preserve original chrom/POS in region fixtures Release simulation #83: Commit d4e7d1d pushed by imsuneth
39m 23s dev
dev
39m 23s
fix osx 14 test failure Release simulation #82: Commit 5ef9312 pushed by imsuneth
43m 49s dev
dev
43m 49s
add region-based varmod regression tests, reorganize varmod fixtures Release simulation #81: Commit b1004e1 pushed by imsuneth
41m 37s dev
dev
41m 37s
add phase-aware variant filtering using, add GT column to outputs Release simulation #80: Commit ce54767 pushed by imsuneth
41m 32s dev
dev
41m 32s
fix ref_cg_pos for trailing base when ref_len != alt_len Release simulation #79: Commit 5d6368a pushed by imsuneth
45m 58s dev
dev
45m 58s
add aggregated varfreq entry with * offset Release simulation #78: Commit 50ab506 pushed by imsuneth
47m 44s dev
dev
47m 44s
always emit offset column in varfreq/varview output, remove --inserti… Release simulation #77: Commit 1c92b09 pushed by imsuneth
34m 7s dev
dev
34m 7s
update offset to be offset from vcf_pos Release simulation #76: Commit b2f3b34 pushed by imsuneth
42m 21s dev
dev
42m 21s
add varfreq test dataset covering multiple variant types (SNP, INS, D… Release simulation #75: Commit ba62dc3 pushed by imsuneth
31m 27s dev
dev
31m 27s