🎯 GSEA Plotting Tool

This is a Python command-line tool for visualizing GSEAPy prerank results from .pkl files using plotnine and patchworklib. The tool creates an enrichment plot and saves it as an image file.

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📦 Features

• 📈 Line plot of RES (Running Enrichment Score)
• 🔦 Hit indicator lines and colored gradient background
• 🛠 Easy CLI with Fire
• 🎨 High-quality output using plotnine and patchworklib

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🚀 Installation

🔧 Clone the repo:

git clone https://github.com/xpf10/gseapyvis.git
cd gseapyvis

python .\gseapyvis\cli.py .\data\test.pkl --output_file gsea_result.pdf

windows:

poetry  install
Invoke-Expression (poetry env activate)
gseapyvis.cmd .\data\test.pkl 

Linux:

poetry install
poetry env use python3
gseapyvis .\data\test.pkl