Provide shell-based help for default Snakemake target #12

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iamh2o wants to merge 4 commits into codex/add-terminal-rules-for-rsem-pipeline from codex/add-rsem-target-rules-and-produce_all-rule

+97 −9,814

iamh2o commented Sep 18, 2025

Summary

replace the default all rule's Python run block with a shell directive that prints the workflow help guidance when Snakemake runs without explicit targets

Testing

not run (Snakemake is not installed in the execution environment)

https://chatgpt.com/codex/tasks/task_e_68cc953bf9c8833196f0739b4ca48572


          Refine default Snakemake help target

545d40c

iamh2o added the codex label

— with

ChatGPT Codex Connector

AWS ParallelCluster user added 3 commits

September 18, 2025 23:40

ff26c7d

bca30e0

f74ac93

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