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Pull requests: Daylily-Informatics/rna-seq-star-deseq2

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Pull requests list

Refactor output layout to match Daylily conventions codex
#20 opened Sep 26, 2025 by iamh2o Loading…
Infer count matrix strands from RSeQC output codex
#14 opened Sep 19, 2025 by iamh2o Loading…
Add contamination and relatedness QC checks codex
#13 opened Sep 18, 2025 by iamh2o Loading…
2
Provide shell-based help for default Snakemake target codex
#12 opened Sep 18, 2025 by iamh2o Loading…
Add dedicated terminal targets and workflow help codex
#11 opened Sep 18, 2025 by iamh2o Loading…
Refactor script rules to shell invocations codex
#10 opened Sep 18, 2025 by iamh2o Loading…
2
Add STAR support for RSEM quantification codex
#9 opened Sep 18, 2025 by iamh2o Loading…
Implement stranded count normalization and DESeq2 workflows codex
#8 opened Sep 18, 2025 by iamh2o Loading…
Prioritize rsem_bowtie to resolve rule ambiguity codex
#5 opened Sep 11, 2025 by iamh2o Loading…
Add RSEM bowtie pipeline rule codex
#4 opened Sep 11, 2025 by iamh2o Loading…
4
Integrate RSEM quantification into pipeline codex
#2 opened Sep 9, 2025 by iamh2o Loading…
2
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