Change the scans to be pyansys scans

.github/workflows/nightly.yml

@@ -63,7 +63,7 @@ jobs:
         with:
           dpf-standalone-TOKEN: ${{ secrets.PYANSYS_CI_BOT_TOKEN }}
           standalone_suffix: ${{ env.DPF_STANDALONE_SUFFIX }}
-          ANSYS_VERSION : ${{ env.ANSYS_VERSION }}
+          ANSYS_VERSION: ${{ env.ANSYS_VERSION }}
 
       - name: Run pytest
         run: make test
@@ -94,10 +94,38 @@ jobs:
           TWINE_PASSWORD: ${{ secrets.PYANSYS_PYPI_PRIVATE_PAT }}
           TWINE_REPOSITORY_URL: ${{ secrets.PRIVATE_PYPI_URL }}
 
+  vulnerabilities:
+    name: Vulnerabilities
+    needs: [ nightly_test ]
+    runs-on: ubuntu-latest
+
+    steps:
+
+      - name: PyAnsys Vulnerability check (on main)
+        if: github.ref == 'refs/heads/main'
+        uses: ansys/actions/[email protected]
+        with:
+          python-version: ${{ env.MAIN_PYTHON_VERSION }}
+          python-package-name: ${{ env.PACKAGE_NAME }}
+          token: ${{ secrets.PYANSYS_CI_BOT_TOKEN }}
+          run-bandit: false
+          hide-log: false
+
+      - name: PyAnsys Vulnerability check (on dev)
+        if: github.ref != 'refs/heads/main'
+        uses: ansys/actions/[email protected]
+        with:
+          python-version: ${{ env.MAIN_PYTHON_VERSION }}
+          python-package-name: ${{ env.PACKAGE_NAME }}
+          token: ${{ secrets.PYANSYS_CI_BOT_TOKEN }}
+          run-bandit: false
+          dev-mode: true
+          hide-log: false
+
   ci-failure:
     name: Teams notify on failure
     if: failure()
-    needs: [ nightly_and_upload ]
+    needs: [ nightly_and_upload, vulnerabilities ]
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v5

.github/workflows/scan_sbom.yml

@@ -0,0 +1,79 @@
+name: Security Scan
+
+env:
+  MAIN_PYTHON_VERSION: '3.13'
+  PACKAGE_NAME: 'ansys-dynamicreporting-core'
+
+on:
+  push:
+    branches:
+      - main
+      - maint/*
+      - release/*
+
+jobs:
+
+  sbom:
+    name: Generate SBOM
+    runs-on: ubuntu-latest
+
+    steps:
+
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.MAIN_PYTHON_VERSION }}
+
+      - name: Build wheelhouse
+        uses: ansys/actions/build-wheelhouse@v10
+        with:
+          library-name: ${{ env.PACKAGE_NAME }}
+          operating-system: ubuntu-latest
+          python-version: ${{ env.MAIN_PYTHON_VERSION }}
+
+      - name: Install from wheelhouse
+        run: python -m pip install --no-index --find-links=wheelhouse ${{ env.PACKAGE_NAME }}
+
+      - name: Generate SBOM with Syft
+        uses: anchore/[email protected]
+        with:
+          format: cyclonedx-json
+          output-file: sbom.cyclonedx.json
+          upload-artifact: false
+
+      - name: Upload SBOM as artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: ${{ env.PACKAGE_NAME }}-sbom
+          path: sbom.cyclonedx.json
+
+
+  vulnerabilities:
+    name: Vulnerabilities
+    runs-on: ubuntu-latest
+
+    steps:
+
+      - name: PyAnsys Vulnerability check (on main)
+        if: github.ref == 'refs/heads/main'
+        uses: ansys/actions/[email protected]
+        with:
+          python-version: ${{ env.MAIN_PYTHON_VERSION }}
+          python-package-name: ${{ env.PACKAGE_NAME }}
+          token: ${{ secrets.PYANSYS_CI_BOT_TOKEN }}
+          run-bandit: false
+          hide-log: false
+
+      - name: PyAnsys Vulnerability check (on dev)
+        if: github.ref != 'refs/heads/main'
+        uses: ansys/actions/[email protected]
+        with:
+          python-version: ${{ env.MAIN_PYTHON_VERSION }}
+          python-package-name: ${{ env.PACKAGE_NAME }}
+          token: ${{ secrets.PYANSYS_CI_BOT_TOKEN }}
+          run-bandit: false
+          dev-mode: true
+          hide-log: false

codegen/adr_utils.txt

@@ -41,7 +41,7 @@ def in_ipynb():
             return True
         if "terminal" in ipy_str:
             return False
-    except Exception:  # todo: please specify the possible exceptions here.
+    except Exception as e:  # todo: please specify the possible exceptions here.
         return False
 
 

src/ansys/dynamicreporting/core/adr_service.py

@@ -241,7 +241,7 @@ def connect(
         username: str = "nexus",
         password: str = "cei",
         session: str | None = "",
-    ) -> None:
+    ) -> None:  # nosec B107
         """
         Connect to a running service.
 
@@ -282,8 +282,8 @@ def connect(
         )
         try:
             self.serverobj.validate()
-        except Exception:
-            self.logger.error("Can not validate dynamic reporting server.\n")
+        except Exception as e:
+            self.logger.error(f"Can not validate dynamic reporting server.\nError: {str(e)}")
             raise NotValidServer
         # set url after connection succeeds
         self._url = url
@@ -301,7 +301,7 @@ def start(
         error_if_create_db_exists: bool = False,
         exit_on_close: bool = False,
         delete_db: bool = False,
-    ) -> str:
+    ) -> str:  # nosec B107
         """
         Start a new service.
 
@@ -392,11 +392,11 @@ def start(
                 if self._docker_launcher:
                     try:
                         create_output = self._docker_launcher.create_nexus_db()
-                    except Exception:  # pragma: no cover
+                    except Exception as e:  # pragma: no cover
                         self._docker_launcher.cleanup()
                         self.logger.error(
-                            f"Error creating the database at the path {self._db_directory} in the "
-                            "Docker container.\n"
+                            "Error creating the database at the path {self._db_directory} in the "
+                            f"Docker container.\nError: {str(e)}"
                         )
                         raise CannotCreateDatabaseError
                     for f in ["db.sqlite3", "view_report.nexdb"]:
@@ -511,10 +511,11 @@ def stop(self) -> None:
         v = False
         try:
             v = self.serverobj.validate()
-        except Exception:
+        except Exception as e:
+            self.logger.error(f"Error: {str(e)}")
             pass
         if v is False:
-            self.logger.error("Error validating the connected service. Can't shut it down.\n")
+            self.logger.error("Error validating the connected service. Can't shut it down.")
         else:
             # If coming from a docker image, clean that up
             try:
@@ -814,7 +815,7 @@ def delete(self, items: list) -> None:
         try:
             _ = self.serverobj.del_objects(items_to_delete)
         except Exception as e:
-            self.logger.warning(f"Error in deleting items: {e}")
+            self.logger.warning(f"Error in deleting items: {str(e)}")
 
     def get_report(self, report_name: str) -> Report:
         """

src/ansys/dynamicreporting/core/docker_support.py

@@ -64,8 +64,8 @@ def __init__(self, image_url: str | None = None, use_dev: bool = False) -> None:
         # Load up Docker from the user's environment
         try:
             self._client: docker.client.DockerClient = docker.from_env()
-        except Exception:  # pragma: no cover
-            raise RuntimeError("Can't initialize Docker")
+        except Exception as e:  # pragma: no cover
+            raise RuntimeError(f"Can't initialize Docker: {str(e)}")
         self._container: docker.models.containers.Container = None
         self._image: docker.models.images.Image = None
         # the Ansys / EnSight version we found in the container
@@ -92,8 +92,8 @@ def pull_image(self) -> docker.models.images.Image:
         """
         try:
             self._image = self._client.images.pull(self._image_url)
-        except Exception:
-            raise RuntimeError(f"Can't pull Docker image: {self._image_url}")
+        except Exception as e:
+            raise RuntimeError(f"Can't pull Docker image: {self._image_url}\n\n{str(e)}")
         return self._image
 
     def create_container(self) -> docker.models.containers.Container:
@@ -119,7 +119,7 @@ def copy_to_host(self, src: str, *, dest: str = ".") -> None:
                     tar_file.write(chunk)
             # Extract the tar archive
             with tarfile.open(tar_file_path) as tar:
-                tar.extractall(path=output_path)
+                tar.extractall(path=output_path)  # nosec B202
             # Remove the tar archive
             tar_file_path.unlink()
         except Exception as e:
@@ -176,7 +176,7 @@ def start(self, host_directory: str, db_directory: str, port: int, ansys_version
         existing_names = [x.name for x in self._client.from_env().containers.list()]
         container_name = "nexus"
         while container_name in existing_names:
-            container_name += random.choice(string.ascii_letters)
+            container_name += random.choice(string.ascii_letters)  # nosec B311
             if len(container_name) > 500:
                 raise RuntimeError("Can't determine a unique Docker container name.")
 

src/ansys/dynamicreporting/core/examples/downloads.py

@@ -42,9 +42,10 @@ def check_url_exists(url: str) -> bool:
         logging.debug(f"Passed url is invalid: {url}\n")
         return False
     try:
-        with request.urlopen(url) as response:
+        with request.urlopen(url) as response:  # nosec B310
             return response.status == 200
-    except Exception:
+    except Exception as e:
+        logging.debug(f"Check url error: {str(e)}\n")
         return False
 
 
@@ -61,7 +62,7 @@ def get_url_content(url: str) -> str:
     str
         content of the URL
     """
-    with request.urlopen(url) as response:
+    with request.urlopen(url) as response:  # nosec B310
         return response.read()
 
 

src/ansys/dynamicreporting/core/serverless/item.py

@@ -3,7 +3,7 @@
 from html.parser import HTMLParser as BaseHTMLParser
 import io
 from pathlib import Path
-import pickle
+import pickle  # nosec B403
 import platform
 import uuid
 

src/ansys/dynamicreporting/core/utils/encoders.py

@@ -34,7 +34,10 @@ def default(self, obj):
             cls = list if isinstance(obj, (list, tuple)) else dict
             try:
                 return cls(obj)
-            except Exception:
+            except Exception as e:  # nosec
+                error_str = f"Object of type {type(obj).__name__} is not JSON serializable: "
+                error_str += str(e)
+                raise TypeError(error_str)
                 pass
         elif hasattr(obj, "__iter__"):
             return tuple(item for item in obj)

src/ansys/dynamicreporting/core/utils/extremely_ugly_hacks.py

@@ -1,6 +1,6 @@
 # All Python3 migration-related ugly hacks go here.
 import base64
-import pickle
+import pickle  # nosec B403
 from uuid import UUID
 
 from .report_utils import text_type
@@ -54,18 +54,18 @@ def safe_unpickle(input_data, item_type=None):
                 try:
                     # be default, we follow python3's way of loading: default encoding is ascii
                     # this will work if the data was dumped using python3's pickle. Just do the usual.
-                    data = pickle.loads(bytes_data)
-                except Exception:
+                    data = pickle.loads(bytes_data)  # nosec B301 B502
+                except Exception:  # nosec
                     try:
-                        data = pickle.loads(bytes_data, encoding="utf-8")
+                        data = pickle.loads(bytes_data, encoding="utf-8")  # nosec B301 B502
                     except Exception:
                         # if it fails, which it will if the data was dumped using python2's pickle, then:
                         # As per https://docs.python.org/3/library/pickle.html#pickle.loads,
                         # "Using encoding='latin1' is required for unpickling NumPy arrays and instances of datetime,
                         # date and time pickled by Python 2."
                         # The data does contain a numpy array. So:
                         try:
-                            data = pickle.loads(bytes_data, encoding="latin-1")
+                            data = pickle.loads(bytes_data, encoding="latin-1")  # nosec B301 B502
 
                             # if the stream contains international characters which were 'loaded' with latin-1,
                             # we get garbage text. We have to detect that and then use a workaround.
@@ -80,7 +80,7 @@ def safe_unpickle(input_data, item_type=None):
                             # this is a tree item ONLY case that has a pickled datetime obj,
                             # we use bytes as the encoding to workaround this issue, because
                             # other encodings will not work.
-                            data = pickle.loads(bytes_data, encoding="bytes")
+                            data = pickle.loads(bytes_data, encoding="bytes")  # nosec B301 B502
 
                             # check again, just in case
                             if item_type == "tree":

src/ansys/dynamicreporting/core/utils/filelock.py

@@ -251,8 +251,9 @@ def acquire(self, timeout=None, poll_intervall=0.05):
                         poll_intervall,
                     )
                     time.sleep(poll_intervall)
-        except Exception:
+        except Exception as e:
             # Something did go wrong, so decrement the counter.
+            logger.error(f"Exception: {str(e)}")
             with self._thread_lock:
                 self._lock_counter = max(0, self._lock_counter - 1)
 

src/ansys/dynamicreporting/core/utils/geofile_processing.py

@@ -9,7 +9,7 @@
 import io
 import os
 import platform
-import subprocess
+import subprocess  # nosec B78 B603 B404
 import typing
 import zipfile
 
@@ -213,7 +213,7 @@ def rebuild_3d_geometry(csf_file: str, unique_id: str = "", exec_basis: str = No
                 stderr=subprocess.DEVNULL,
                 close_fds=True,
                 creationflags=create_flags,
-            )
+            )  # nosec B78 B603
         except Exception as e:
             print(f"Warning: unable to convert '{csf_file}' into AVZ format: {str(e)}")
     # At this point, if we have an original AVZ file or a converted udrw file, we