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Add method to decide family action #1107

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Add method to decide family action #1107

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9 changes: 7 additions & 2 deletions modules/EnsEMBL/Web/Component/Gene/Compara_Portal.pm
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
=head1 LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-2024] EMBL-European Bioinformatics Institute
Copyright [2016-2025] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
Expand Down Expand Up @@ -42,12 +42,13 @@ sub content {
my $ortho_image = $strain_avail ? 'strain_ortho.gif' : 'compara_ortho.gif';
my $para_image = $strain_avail ? 'strain_para.gif' : 'compara_para.gif';

my $family_page_action = $self->_get_compara_family_page_action;
my $buttons = [
{ title => 'Genomic alignments', img => '80/compara_align.gif', url => $availability->{'has_alignments'} ? $hub->url({ action => 'Compara_Alignments' }) : '' },
{ title => 'Gene tree', img => '80/compara_tree.gif', url => $availability->{'has_'.$strain_avail.'gene_tree'} ? $hub->url({ action => $strain_url.'Compara_Tree' }) : '' },
{ title => 'Orthologues', img => '80/'.$ortho_image, url => $availability->{'has_'.$strain_avail.'orthologs'} ? $hub->url({ action => $strain_url.'Compara_Ortholog' }) : '' },
{ title => 'Paralogues', img => '80/'.$para_image, url => $availability->{'has_'.$strain_avail.'paralogs'} ? $hub->url({ action => $strain_url.'Compara_Paralog' }) : '' },
{ title => 'Families', img => '80/compara_fam.gif', url => $availability->{'family'} ? $hub->url({ action => 'Family' }) : '' },
{ title => 'Families', img => '80/compara_fam.gif', url => $availability->{'family'} ? $hub->url({ action => $family_page_action }) : '' },
];

@$buttons = grep { $_->{title} !~ /^Families$|^Genomic alignments$/ } @$buttons if($is_strain_view); #remove the one we dont show for strain views
Expand All @@ -57,4 +58,8 @@ sub content {
return $html;
}

sub _get_compara_family_page_action {
return 'Family';
}

1;